Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0945 ATGGGGAGGTTAAGAGATAAACTTTTATCATTTTTCAATAACAGATGGTTAGTTTTCGTGGCTGCAATCTGGATACAATCATGTGCAGGAATTGGGTATCTATTTGGAAGCATATCACCTGTTATCAAAACAAATTTAAGTTATAATCAAAGGCAACTTGCACGTCTTGGTGTTGCTAAAGATCTTGGTGATAGCGTTGGGTTTTTAGCTGCCACTTTGTCTGAAATCCTTCCTTTTTGGGGTACTCTTCTTGTTGGCGCTGTTAATAATTTCATTGGTTATGGTTGGGTTTGGCTCATTGTTACTGGTAGAGCTCCTGTTTTGCCTTTATGGGCTATGTGCGTTCTTATATTTGTGGGAACGAATGGGGAGACTTACTTCAACACGGTTTCTCTGGTATCTTGCGTGCAAAACTTTCCGAAAAGCAGGGGTCCTGTGGTCGGGATTCTGAAAGGTTTTGCTGGTTTAAGTGGTGCAATTTTAACTCAGGTATATGCAATCATGCATTCTCCTGATGAAGCCAATCTAGTATTCATGGTTGCAGTTGGCCCTGCAATGGTGGCTATTGGTCTGATGTTTTTCGTGAGACCTGTCGGGGGTCACAGACAAATTAGACCATCTGACGGCATGAACTTTACGTTTGTTTATGGTATCTGCCTCCTTTTGGCTGCATATTTAATGGGGGTCATGCTTGTTGAGGATCTTGTTCCCTTGAGCTCCACCGTGATCACCATTTTTACAGCAATTATGTTCCTCATCATTCTGGCTCCCATTTTTATTCCCGTGACATTGACTTTGAGCCAAGAGCCAATATCTGCTGAACAAGAGTCTCTACTACAACAGTCACAAAAACAGGAACCTGGCGAATCTGAACCAAATCGTCATGAAGTGATATTCAGTGAGGTGGAAGATGAAAAGTCTGAGGATGAGGACTCACTTCCTGCTACCGAGAGACAAAGACGCATCGCTCAGTTGCAAGCTAAACTAATGCAAGCAGCTGCAGAAGGAGCAGTAAGGATCAAGAGGAGGAAGGGTCCACGTAGAGGGGAAGACTTCACTTTGGCGCAAGCTTTGATTAAAGCTGACTTCTGGCTTATATTTTTCTCCCTTCTCTTGGGTTCTGGAACTGGATTGACTGTGATCGATAACCTTGGTCAGATGAGCCAGTCTTTAGGTTATGATAACACGCATATTTTTGTATCCTTGATCAGTATATGGAACTTTCTGGGCCGTGTTGGAGGCGGATACTTCTCTGAAATTATTGTGAGAGATTATGCATATCCAAGACCAGTTGCCATGGCTATTGCCCAATTCATTATGGTAATTGGACATGTCTTCATTGGTATGGGATGGCCCGGGGCAATGTATATCGGTACTCTGATAACAGGGCTTGGGTATGGATCTCACTGGGCGATCGTTCCTGCTACTGCCTCTGAATTGTTTGGGTTGAAAAAGTTTGGGGCTCTATACAATTTCCTTACACTGTCAACGCCTATTGGGTCTCTAATATTTTCTGGCGTAATTGCAAGTCATATATATGATAGTGAAGCGGAGAAGCAAGCTCATAATCATCAACCACGGCTGCAGAACTCTCGATCAATGTGGTCGGGTGAACTTAATGCAGAGGGACCACATACTTGTGAGGGTTCAGTATGCTACTGTCTAACTTCTATGATAATGGCTGGATTCTGTGCTGTTGCAGGCATGTTAAGTTTGATGTTGGTGCATCGGACGAAGATTGTCTACAAAAATCTCTACGGACAATCTCGTACACCTGGGCTTTCATAA 1788 43.23 MGRLRDKLLSFFNNRWLVFVAAIWIQSCAGIGYLFGSISPVIKTNLSYNQRQLARLGVAKDLGDSVGFLAATLSEILPFWGTLLVGAVNNFIGYGWVWLIVTGRAPVLPLWAMCVLIFVGTNGETYFNTVSLVSCVQNFPKSRGPVVGILKGFAGLSGAILTQVYAIMHSPDEANLVFMVAVGPAMVAIGLMFFVRPVGGHRQIRPSDGMNFTFVYGICLLLAAYLMGVMLVEDLVPLSSTVITIFTAIMFLIILAPIFIPVTLTLSQEPISAEQESLLQQSQKQEPGESEPNRHEVIFSEVEDEKSEDEDSLPATERQRRIAQLQAKLMQAAAEGAVRIKRRKGPRRGEDFTLAQALIKADFWLIFFSLLLGSGTGLTVIDNLGQMSQSLGYDNTHIFVSLISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAIAQFIMVIGHVFIGMGWPGAMYIGTLITGLGYGSHWAIVPATASELFGLKKFGALYNFLTLSTPIGSLIFSGVIASHIYDSEAEKQAHNHQPRLQNSRSMWSGELNAEGPHTCEGSVCYCLTSMIMAGFCAVAGMLSLMLVHRTKIVYKNLYGQSRTPGLS 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12917262 12919814 - evm.model.ptg000021l.945 HCH13g0945 557450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0945 595 Coils Coil 315 335 - -
HCH13g0945 595 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 14 584 - GO:0016020(PANTHER)
HCH13g0945 595 CDD MFS_Mch1p_like 15 567 - -
HCH13g0945 595 SUPERFAMILY MFS general substrate transporter 8 202 IPR036259 -
HCH13g0945 595 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
HCH13g0945 595 SUPERFAMILY MFS general substrate transporter 212 579 IPR036259 -
HCH13g0945 595 Gene3D MFS general substrate transporter like domains 312 519 IPR036259 -
HCH13g0945 595 Pfam Nodulin-like 15 262 IPR010658 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0945 HCH-Chr13:12917262 HCH6g0265 HCH-Chr6:3768863 9.50E-89 dispersed
HCH13g0945 HCH-Chr13:12917262 HCH2g0539 HCH-Chr2:49198931 7.20E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0945 - - - 0.0