Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0949 ATGGATAATATTAATTACCAGTTCTTATTCCCTGCTCAGCCTTCTTCATCAAATACTGTAAATGGGAATTTCCAGGTTGCTGATTCTGTTCATCTTAAGGGAAGCTTGGGGATAAGGTCATCCATGTCCATGGAGTTTTCAGATAAAGCAGAAATAGAGGAAGAAGATGACAATTCTCTCGGTGAAATCGATGTCGAAAAACCGGAAAAAATGAAGGGGGAGAAGAAGATCAGGAAACCAAGATATGCTTTTCAAACGAGGAGTCAAGTTGATATACTTGATGATGGCTACCGATGGAGAAAATATGGTCAAAAGGCTGTAAAGAACAATAAATTTCCCAGGAGCTATTACAAGTGTTCGCATCAAGGCTGCAAAGTGAAGAAACAAATTCAACGCCTAACAATTGATGAAGGCGTTGTGTTAACAACCTATGAAGGAGTTCATTCCCATCCCATTGAGAAACCCACAGACAACTTTGAACATATCTTGACCCACATGCAAATTTACCCTTCCTTTTAA 519 39.11 MDNINYQFLFPAQPSSSNTVNGNFQVADSVHLKGSLGIRSSMSMEFSDKAEIEEEDDNSLGEIDVEKPEKMKGEKKIRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYKCSHQGCKVKKQIQRLTIDEGVVLTTYEGVHSHPIEKPTDNFEHILTHMQIYPSF 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 13316151 13318529 - evm.model.ptg000021l.949 HCH13g0949 557454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0949 172 Pfam WRKY DNA -binding domain 94 151 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH13g0949 172 FunFam WRKY transcription factor 57 79 153 - -
HCH13g0949 172 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 54 153 IPR044810 GO:0003700(InterPro)
HCH13g0949 172 MobiDBLite consensus disorder prediction 48 76 - -
HCH13g0949 172 SUPERFAMILY WRKY DNA-binding domain 85 152 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH13g0949 172 ProSiteProfiles WRKY domain profile. 88 153 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH13g0949 172 SMART WRKY_cls 93 152 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH13g0949 172 Gene3D WRKY domain 77 153 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0949 HCH-Chr13:13316151 HCH5g1190 HCH-Chr5:40914156 1.40E-45 dispersed
HCH13g0949 HCH-Chr13:13316151 HCH9g0052 HCH-Chr9:321993 2.20E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32835 PF03106 WRKY 7.50E-25 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0949 - - - 0.0