Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0967 ATGGTTTTACGAGCAATTTTCCTAGTTTTCCTTCTTAGCAACCCTTTTTCATTAGTGTTTTCTCTTAATGAAGAAGGATTGTCTCTACTTTCATTCAAAAACTCCTTAACTTCTTATGCCGATGACTATCTCCAAAACTGGAACTCTTCTGATGACACCCCATGTTCATGGAATGGAATCACTTGCACACAAGAAAGAGTTGTCTCTCTCAGCATTGTAAACAAGAAACTCTCTGGAACTCTCCATCCTGCACTCGGAAAACTCACCGCGCTCCGCTATTTAAGCCTTCGGAATAACGGGCTGTTCGGAAACTTACCGGATGAGTTTTGCAACCTGGTTGAGTTACAATGCTTAGTTCTGTCAGGGAATTCATTATCTGGGACTCTGCCGCCCAAGGTTGGAAATCTGATGCACCTGCAGACCTTAGACCTCTCACATAATTTCTTCACTGGTTCCATACCTACATCTGTGATTCAATGCAAGAGATTGAAGGCATTTGTGTTGAGTCAAAATAACCTCACTGGCTCTATCCCATATGGTTTTGGCTCACACTTGACATCTCTTCAGAATCTCAATCTTTCCTTCAATGTCATAGGCGGTTCGATCCCTTCAGATATTGGCAACTTGTCCAATTTACAAGGTACTTTAGATTTTTCACATAATATTTTTACTGGTCCAATCCCACCAAGCCTAGGCAGCCTTCCTGAGAATCTTTATATTGATCTCAGTTACAACAATCTCAGTGGTCCTATACCACCAGAAGAAGTTTTCCAGAAAATTGGACCTCCAGCTTATATAGGCAATCCTTTTCTATGTGGAATTCCCCTCAATATTTCATGTCCATTGGCATCACCACCAACTCCGAACTCTGAATCCTTGTTTCATTGCCCATCACATGGGAAATCTTGCTCCATGATCACACTTGCTGCAAGTATAATAATGGCTTTCTGCTTGGTTGGCCTTTTAGTCTTTTGGTGCAAGAGGGTGTATCCTCGTAAAGGAAGTGAAAATATAGGTAGCTGTAACTTTAGGGAGGCATTGATGGTTAAAACAGAGTTCTCTTGCTTTGCAAAAAATGATATTGAACCCCTGCCAGAAAACATGGAGAAGTATAACTTTGTGCTACTGGATCAACACGTGTTCTTCGATCTCGAACAACTCTTGAAAGCCTCGGCTTTTCTTCTAGGTAAGAATGGAAATGGGATTGTCTATAAAGTGGTTCTTGAGAATGGAAAAACAATAGCTGTAAGAAGATTAGAAGATGGAGCTTACCAAAGGTTTAAAGAGTTCCATACAGAAGTTGAAGCGATTGGGAAAGTCAGACATCCCAATATTGTGACTCTTCTGGCTTATTGCTGGTCTGTTGATGAGAAGCTACTCATATATGAGTTCATACCACAGGGTGACCTGGCCACTGCAATTCATGGGAAAGCTGAAGTTATATGCTTCACACCGCTTTCTTGGCCGGACCGTATGAAGATCATGAGAGGAATAGCAAAAGGCTTAGCTTACCTTCATGAATTCAGTCCAAGAAAGTATGTACATGGTGATTTGAAGCCAAGAAACATCCTTCTTGGAGTGAACATGGAACCATACATCTCAGATTTCGGACTCGGTCGACTTGCCAATACGATAGAAGAGTTCAATGACTCCCAATCAGAGCAAATTATGCCGCATCAGAATCCTCCATTTCGATCAAACTCCATATGCTTGGGGTCTCATTATCAAGCTCCTGAAGCCTTGAGGGCATCAAAGCCATCCCAGAAGTGGGATGTGTACTCTTTTGGTGTCATTTTAATGGAAGTTGTTTCAGGAAAGTCGCCCATAATTCAAATGGGTTCATTGGAAATGGATTTGGTTCAATGGATACAACTCGGTATTGGTGAAGGAAAAGCTCCATCATGTAGCATAGATCCATCATTAGGTGAAAATGTGGACAAGGAAGAAGCTGCAGCTGCAATTAGAATAGCTATTGCCTGCACTCACAAGATCCCTGAGAAGAGACCAAGTATGAGATTTGTCTCTGATTGTTTGGACAAATTGGCAACATTTTAA 2055 41.46 MVLRAIFLVFLLSNPFSLVFSLNEEGLSLLSFKNSLTSYADDYLQNWNSSDDTPCSWNGITCTQERVVSLSIVNKKLSGTLHPALGKLTALRYLSLRNNGLFGNLPDEFCNLVELQCLVLSGNSLSGTLPPKVGNLMHLQTLDLSHNFFTGSIPTSVIQCKRLKAFVLSQNNLTGSIPYGFGSHLTSLQNLNLSFNVIGGSIPSDIGNLSNLQGTLDFSHNIFTGPIPPSLGSLPENLYIDLSYNNLSGPIPPEEVFQKIGPPAYIGNPFLCGIPLNISCPLASPPTPNSESLFHCPSHGKSCSMITLAASIIMAFCLVGLLVFWCKRVYPRKGSENIGSCNFREALMVKTEFSCFAKNDIEPLPENMEKYNFVLLDQHVFFDLEQLLKASAFLLGKNGNGIVYKVVLENGKTIAVRRLEDGAYQRFKEFHTEVEAIGKVRHPNIVTLLAYCWSVDEKLLIYEFIPQGDLATAIHGKAEVICFTPLSWPDRMKIMRGIAKGLAYLHEFSPRKYVHGDLKPRNILLGVNMEPYISDFGLGRLANTIEEFNDSQSEQIMPHQNPPFRSNSICLGSHYQAPEALRASKPSQKWDVYSFGVILMEVVSGKSPIIQMGSLEMDLVQWIQLGIGEGKAPSCSIDPSLGENVDKEEAAAAIRIAIACTHKIPEKRPSMRFVSDCLDKLATF 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 15419322 15421540 - evm.model.ptg000021l.967 HCH13g0967 557472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0967 684 FunFam Leucine-rich repeat receptor-like kinase 26 132 - -
HCH13g0967 684 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 154 280 - -
HCH13g0967 684 SMART serkin_6 393 682 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0967 684 Pfam Leucine rich repeat 138 198 IPR001611 GO:0005515(InterPro)
HCH13g0967 684 SMART LRR_typ_2 234 259 IPR003591 -
HCH13g0967 684 SMART LRR_typ_2 185 209 IPR003591 -
HCH13g0967 684 SMART LRR_typ_2 88 111 IPR003591 -
HCH13g0967 684 SMART LRR_typ_2 112 135 IPR003591 -
HCH13g0967 684 SMART LRR_typ_2 136 160 IPR003591 -
HCH13g0967 684 PANTHER OS05G0588300 PROTEIN 159 680 IPR050994 -
HCH13g0967 684 Pfam Protein kinase domain 395 672 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0967 684 SUPERFAMILY Protein kinase-like (PK-like) 394 676 IPR011009 -
HCH13g0967 684 Pfam Leucine rich repeat N-terminal domain 22 63 IPR013210 -
HCH13g0967 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 513 525 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g0967 684 ProSiteProfiles Protein kinase domain profile. 389 684 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g0967 684 Pfam Leucine Rich Repeat 91 112 IPR001611 GO:0005515(InterPro)
HCH13g0967 684 Pfam Leucine Rich Repeat 115 136 IPR001611 GO:0005515(InterPro)
HCH13g0967 684 Pfam Leucine Rich Repeat 215 234 IPR001611 GO:0005515(InterPro)
HCH13g0967 684 Gene3D Ribonuclease Inhibitor 181 282 IPR032675 -
HCH13g0967 684 Gene3D Ribonuclease Inhibitor 22 180 IPR032675 -
HCH13g0967 684 SUPERFAMILY L domain-like 26 276 - -
HCH13g0967 684 Gene3D Phosphorylase Kinase; domain 1 365 464 - -
HCH13g0967 684 Gene3D Transferase(Phosphotransferase) domain 1 465 683 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0967 HCH-Chr13:15419322 HCH1g0742 HCH-Chr1:56205829 5.50E-133 dispersed
HCH13g0967 HCH-Chr13:15419322 HCH10g1291 HCH-Chr10:45366271 3.40E-135 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81191 PF00069 Pkinase 5.70E-35 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0967 - - - 0.0