Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g0981 ATGTTTTTAGAGAAAGCAGAAGTAGATTTGCCTCAGGAAACAAGTCAAACGGAGGAGGTTGAAATGGAGGATATTGCAGAAGACCCTGTAATAGACATTGATGGTTCCGATGCAGAGAATCCGCTTGCCGTGGTCGATTATGTCGACGATCTCTATGCACACTATAGAAAGATAGAGAATTCCAGCTGTGTCTCCCCAGACTACATGGCTCAACAATTTGACATCAATGAGAGGATGAGAGCTATACTTATAGATTGGCTCATAGAGGTGCACGATAAGTTCGATTTGATGGGCGAAACGTTGTTTCTCACGGTGAATCTCATAGACAGATTCCTATCACAGAAAACATTAGTGAGAAAGAAGCTTCAGCTGGTTGGTTTGGTTTCAATGCTCTTAGCCTGCAAATATGAGGAAGTATCTGTCCCTATTGTGGGAGATTTGATTCTAATATCTGATAAAGCTTACTCCAGGAAAGAAGTTCTTGAAATGGAGACAGTGATGCTCAATTCTTTGCAGTTTAACATGTCAGTTCCTACACCATATGTTTTCCTGCAGAGGTTCTTCAAAGCTGCCCAATCTGACAAAAAGCTCGAGTTACTGGCCTTCTTCTTAATCGAACTTTCGCTCATCGAGTACGAAATGCTCAGATTTCGACCGTCTTTGTTAGCGGCAGCAGCAATTTACACAGCTCAATGTACTCTTACTGGTGTAAAGGAATGGAACAGGACATGTGAGTGGCATTCTAGCTACTCAGAAGATCAGCTCCTAGAATGTTCAAGATTGATGGTGGGATTCCACCAAAAAGCAGCAACAGGAAAACTTACAGGGGTTCATAGAAAGTATTGTACATCAAAATTTAACTATACAGCAAAATGTGAACCTGCACATTTTCTTTTGCAGACTCAGCAATAA 912 41.23 MFLEKAEVDLPQETSQTEEVEMEDIAEDPVIDIDGSDAENPLAVVDYVDDLYAHYRKIENSSCVSPDYMAQQFDINERMRAILIDWLIEVHDKFDLMGETLFLTVNLIDRFLSQKTLVRKKLQLVGLVSMLLACKYEEVSVPIVGDLILISDKAYSRKEVLEMETVMLNSLQFNMSVPTPYVFLQRFFKAAQSDKKLELLAFFLIELSLIEYEMLRFRPSLLAAAAIYTAQCTLTGVKEWNRTCEWHSSYSEDQLLECSRLMVGFHQKAATGKLTGVHRKYCTSKFNYTAKCEPAHFLLQTQQ 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 20460594 20461505 + evm.model.ptg000021l.981 HCH13g0981 557486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g0981 303 Pfam Cyclin, N-terminal domain 50 176 IPR006671 -
HCH13g0981 303 MobiDBLite consensus disorder prediction 1 21 - -
HCH13g0981 303 CDD CYCLIN_AtCycB-like_rpt2 178 294 - -
HCH13g0981 303 CDD CYCLIN_AtCycB-like_rpt1 27 173 - -
HCH13g0981 303 Gene3D - 64 176 - -
HCH13g0981 303 Pfam Cyclin, C-terminal domain 178 294 IPR004367 -
HCH13g0981 303 PIRSF Cyclin_A_B_D_E 4 303 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
HCH13g0981 303 ProSitePatterns Cyclins signature. 80 111 IPR048258 -
HCH13g0981 303 SMART cyclin_7 182 264 IPR013763 -
HCH13g0981 303 SMART cyclin_7 85 169 IPR013763 -
HCH13g0981 303 FunFam G2/mitotic-specific cyclin-1 166 290 - -
HCH13g0981 303 SUPERFAMILY Cyclin-like 39 175 IPR036915 -
HCH13g0981 303 SMART Cyclin_C_2 178 295 IPR004367 -
HCH13g0981 303 PANTHER CYCLINS 21 282 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
HCH13g0981 303 SUPERFAMILY Cyclin-like 177 295 IPR036915 -
HCH13g0981 303 Gene3D - 50 290 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0981 HCH-Chr13:20460594 HCH13g1311 HCH-Chr13:41075728 2.40E-125 dispersed
HCH13g0981 HCH-Chr13:20460594 HCH14g0711 HCH-Chr14:35539224 5.80E-167 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g0981 K21777 - csv:101216622 529.25