Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1014 ATGGGGAAGAAAGGAGGCAGCTCTTGGTTAACAGCTGTAAAACGAGCTTTCAGATCTCCCACTAAAGATGACGACGAAAAGAAAAGAGAAAAACGGAGATGGATTTTCAGAAAACCAGCAAATAATCAGGAAATCGCAGTCTCGACGGTTTCAGTTTCAACAAATGATCATGCCCTTGCAGTGGCTGAGGCAGCAATGGCCACCGCCAGAGCAGCGGCAGAAGTGGTTCGTCTAACAAGGCCTATAAACCATGCTGGATCAGATCATCAGCACTACGCTTCCACTGTTATTCAAACCGCATTTAGAGGATATCTAGCGAGAAGGGCTCTCCGTGCGCTGAAGGGACTTGTAAAGTTGCAAGCCTTAGTGAGGGGACATAATGTGAGAAAGCAAGCAAAGACCACACTTCAATGCATGCAAGCTTTGGTCAGAGTGCAGGCACGAGTGCTGGATCAACGAATGAGACTTTCTCTTGAAGGCAGTCGTAATTCTACCTTCAGTGATACCAATAGTGTTTTGGAATCTCGATATCTTCATGGTATCTCAGAAAGGAAGTCTTCTTGTCTATCAGGAGAAGGAAGTAGCATTGTAGGCGATTGGGATGAACGTCCCCACACCATTGAAGAAGTCAAGGCAATGTTACAGCAAAGAAAAGATGCTTCTTTGAAACGTGACAAAATATTATCTCACTCCTTTTCTCAACAGATATGGAAGACTGGGAGGAGACCATCAATAGGAAATGAAACGGAGCTTGGAGAAGAACCCAAGTGGCTGGATCAGTGGATGGCGAGGAAGCCATGGGATAGCAAAGGAAGAACTTCCATGGATCACAGACCAGAAACCATTAAAACAGTGGAAATCGATACCTCTCGACCATACTCATATTTAGCACCTGGTAATCTCATCAGAATGAATAATCAAACCCAATATCGCCAATTACAAAGGCCTAATTCACTTTCTTCCGCTTCTCCACTTCACAGAGCACAGAACAAGGTAAACCAACACCTCCATTACCAGTACCAAGTAACCCCATCACCATCAAAAACCAGGCCAATACAAGTCCGTTCTGCGAGTCCTCACTACAGTAGAGAAGATAGAAGCCACATTACATCTCAAACGCCAAGCTTGAGGTCGAAATATCACAGCAATGTAGGTGAATCTGCATTGCCTAACTACATGGTAGCAACAGAGTCTGCCAAGGCTCGAGTTCGCTCTCAAAGCGCACCAAGGCAAAGACCGTCTACGCCCGAGAGGGAAAGAGTTGGAACAGCGAGGAAGCGACTTTCTTTTCCGGTACCTGATCCACATGGTGGAGGAATGAACTATGGGGTTTATGGGAATAACTTGAGGAGTCCAAGCTTTAAGAGTACTTGTGGATCACATGTTGGATTGGAGCAACAGTCTAACTATTCTTCTTGCTACACAGAGAGCCATGGTGGAGAGGTATCTCCCTCTTCCACAAGTGACCTCAGAAGATGGTTGAGATGA 1488 45.5 MGKKGGSSWLTAVKRAFRSPTKDDDEKKREKRRWIFRKPANNQEIAVSTVSVSTNDHALAVAEAAMATARAAAEVVRLTRPINHAGSDHQHYASTVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKTTLQCMQALVRVQARVLDQRMRLSLEGSRNSTFSDTNSVLESRYLHGISERKSSCLSGEGSSIVGDWDERPHTIEEVKAMLQQRKDASLKRDKILSHSFSQQIWKTGRRPSIGNETELGEEPKWLDQWMARKPWDSKGRTSMDHRPETIKTVEIDTSRPYSYLAPGNLIRMNNQTQYRQLQRPNSLSSASPLHRAQNKVNQHLHYQYQVTPSPSKTRPIQVRSASPHYSREDRSHITSQTPSLRSKYHSNVGESALPNYMVATESAKARVRSQSAPRQRPSTPERERVGTARKRLSFPVPDPHGGGMNYGVYGNNLRSPSFKSTCGSHVGLEQQSNYSSCYTESHGGEVSPSSTSDLRRWLR 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 27171300 27173239 + evm.model.ptg000021l.1014 HCH13g1014 557519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1014 495 Gene3D - 87 142 - -
HCH13g1014 495 MobiDBLite consensus disorder prediction 397 435 - -
HCH13g1014 495 MobiDBLite consensus disorder prediction 342 356 - -
HCH13g1014 495 PANTHER IQ-DOMAIN 5-RELATED 9 425 - -
HCH13g1014 495 MobiDBLite consensus disorder prediction 471 495 - -
HCH13g1014 495 FunFam IQ-domain 11 89 140 - -
HCH13g1014 495 ProSiteProfiles IQ motif profile. 90 118 - -
HCH13g1014 495 MobiDBLite consensus disorder prediction 1 30 - -
HCH13g1014 495 Pfam Protein of unknown function (DUF4005) 358 444 IPR025064 -
HCH13g1014 495 ProSiteProfiles IQ motif profile. 114 141 - -
HCH13g1014 495 MobiDBLite consensus disorder prediction 342 379 - -
HCH13g1014 495 SMART iq_5 89 111 IPR000048 GO:0005515(InterPro)
HCH13g1014 495 SMART iq_5 112 133 IPR000048 GO:0005515(InterPro)
HCH13g1014 495 Pfam IQ calmodulin-binding motif 117 133 IPR000048 GO:0005515(InterPro)
HCH13g1014 495 Pfam IQ calmodulin-binding motif 93 111 IPR000048 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0756 HCH-Chr10:7183657 HCH13g1014 HCH-Chr13:27171300 1.40E-11 dispersed
HCH13g1014 HCH-Chr13:27171300 HCH7g1783 HCH-Chr7:49381077 7.00E-162 dispersed
HCH13g1014 HCH-Chr13:27171300 HCH13g0419 HCH-Chr13:2901832 7.20E-42 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1014 - - - 0.0