Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1014 ATGGGGAAGAAAGGAGGCAGCTCTTGGTTAACAGCTGTAAAACGAGCTTTCAGATCTCCCACTAAAGATGACGACGAAAAGAAAAGAGAAAAACGGAGATGGATTTTCAGAAAACCAGCAAATAATCAGGAAATCGCAGTCTCGACGGTTTCAGTTTCAACAAATGATCATGCCCTTGCAGTGGCTGAGGCAGCAATGGCCACCGCCAGAGCAGCGGCAGAAGTGGTTCGTCTAACAAGGCCTATAAACCATGCTGGATCAGATCATCAGCACTACGCTTCCACTGTTATTCAAACCGCATTTAGAGGATATCTAGCGAGAAGGGCTCTCCGTGCGCTGAAGGGACTTGTAAAGTTGCAAGCCTTAGTGAGGGGACATAATGTGAGAAAGCAAGCAAAGACCACACTTCAATGCATGCAAGCTTTGGTCAGAGTGCAGGCACGAGTGCTGGATCAACGAATGAGACTTTCTCTTGAAGGCAGTCGTAATTCTACCTTCAGTGATACCAATAGTGTTTTGGAATCTCGATATCTTCATGGTATCTCAGAAAGGAAGTCTTCTTGTCTATCAGGAGAAGGAAGTAGCATTGTAGGCGATTGGGATGAACGTCCCCACACCATTGAAGAAGTCAAGGCAATGTTACAGCAAAGAAAAGATGCTTCTTTGAAACGTGACAAAATATTATCTCACTCCTTTTCTCAACAGATATGGAAGACTGGGAGGAGACCATCAATAGGAAATGAAACGGAGCTTGGAGAAGAACCCAAGTGGCTGGATCAGTGGATGGCGAGGAAGCCATGGGATAGCAAAGGAAGAACTTCCATGGATCACAGACCAGAAACCATTAAAACAGTGGAAATCGATACCTCTCGACCATACTCATATTTAGCACCTGGTAATCTCATCAGAATGAATAATCAAACCCAATATCGCCAATTACAAAGGCCTAATTCACTTTCTTCCGCTTCTCCACTTCACAGAGCACAGAACAAGGTAAACCAACACCTCCATTACCAGTACCAAGTAACCCCATCACCATCAAAAACCAGGCCAATACAAGTCCGTTCTGCGAGTCCTCACTACAGTAGAGAAGATAGAAGCCACATTACATCTCAAACGCCAAGCTTGAGGTCGAAATATCACAGCAATGTAGGTGAATCTGCATTGCCTAACTACATGGTAGCAACAGAGTCTGCCAAGGCTCGAGTTCGCTCTCAAAGCGCACCAAGGCAAAGACCGTCTACGCCCGAGAGGGAAAGAGTTGGAACAGCGAGGAAGCGACTTTCTTTTCCGGTACCTGATCCACATGGTGGAGGAATGAACTATGGGGTTTATGGGAATAACTTGAGGAGTCCAAGCTTTAAGAGTACTTGTGGATCACATGTTGGATTGGAGCAACAGTCTAACTATTCTTCTTGCTACACAGAGAGCCATGGTGGAGAGGTATCTCCCTCTTCCACAAGTGACCTCAGAAGATGGTTGAGATGA 1488 45.5 MGKKGGSSWLTAVKRAFRSPTKDDDEKKREKRRWIFRKPANNQEIAVSTVSVSTNDHALAVAEAAMATARAAAEVVRLTRPINHAGSDHQHYASTVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKTTLQCMQALVRVQARVLDQRMRLSLEGSRNSTFSDTNSVLESRYLHGISERKSSCLSGEGSSIVGDWDERPHTIEEVKAMLQQRKDASLKRDKILSHSFSQQIWKTGRRPSIGNETELGEEPKWLDQWMARKPWDSKGRTSMDHRPETIKTVEIDTSRPYSYLAPGNLIRMNNQTQYRQLQRPNSLSSASPLHRAQNKVNQHLHYQYQVTPSPSKTRPIQVRSASPHYSREDRSHITSQTPSLRSKYHSNVGESALPNYMVATESAKARVRSQSAPRQRPSTPERERVGTARKRLSFPVPDPHGGGMNYGVYGNNLRSPSFKSTCGSHVGLEQQSNYSSCYTESHGGEVSPSSTSDLRRWLR 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 27171300 27173239 + evm.model.ptg000021l.1014 HCH13g1014 557519

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1014 495 Gene3D - 87 142 - -
HCH13g1014 495 MobiDBLite consensus disorder prediction 397 435 - -
HCH13g1014 495 MobiDBLite consensus disorder prediction 342 356 - -
HCH13g1014 495 PANTHER IQ-DOMAIN 5-RELATED 9 425 - -
HCH13g1014 495 MobiDBLite consensus disorder prediction 471 495 - -
HCH13g1014 495 FunFam IQ-domain 11 89 140 - -
HCH13g1014 495 ProSiteProfiles IQ motif profile. 90 118 - -
HCH13g1014 495 MobiDBLite consensus disorder prediction 1 30 - -
HCH13g1014 495 Pfam Protein of unknown function (DUF4005) 358 444 IPR025064 -
HCH13g1014 495 ProSiteProfiles IQ motif profile. 114 141 - -
HCH13g1014 495 MobiDBLite consensus disorder prediction 342 379 - -
HCH13g1014 495 SMART iq_5 89 111 IPR000048 GO:0005515(InterPro)
HCH13g1014 495 SMART iq_5 112 133 IPR000048 GO:0005515(InterPro)
HCH13g1014 495 Pfam IQ calmodulin-binding motif 117 133 IPR000048 GO:0005515(InterPro)
HCH13g1014 495 Pfam IQ calmodulin-binding motif 93 111 IPR000048 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1014 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0756 HCH-Chr10:7183657 HCH13g1014 HCH-Chr13:27171300 1.40E-11 dispersed
HCH13g1014 HCH-Chr13:27171300 HCH7g1783 HCH-Chr7:49381077 7.00E-162 dispersed
HCH13g1014 HCH-Chr13:27171300 HCH13g0419 HCH-Chr13:2901832 7.20E-42 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g0657 . 101 278 IQD Protein Family AT3G09710 55.8 2.3e-50 196.8
HCH13g0419 . 1 471 IQD Protein Family AT3G52290 55.7 3.1e-105 379.0
HCH8g0320 . 1 410 IQD Protein Family AT3G22190 55.8 2.5e-91 332.8
HCH12g0495 . 1 440 IQD Protein Family AT2G26180 58.8 4.0e-118 421.8
HCH14g0967 . 1 279 IQD Protein Family AT2G33990 50.5 2.8e-61 232.3
HCH6g0649 . 44 222 IQD Protein Family AT2G33990 53.9 2.1e-48 189.5
HCH6g0649 . 47 257 IQD Protein Family AT3G15050 56.3 1.3e-58 223.4
HCH10g0074 . 1 546 IQD Protein Family AT3G59690 52.3 2.3e-107 386.3
HCH13g1014 . 1 495 IQD Protein Family AT4G00820 54.5 4.5e-122 435.3
HCH7g1783 . 1 512 IQD Protein Family AT4G00820 53.0 1.0e-121 434.1
HCH7g1783 . 1 512 IQD Protein Family AT1G01110 51.8 8.3e-121 431.0
HCH13g1014 . 1 495 IQD Protein Family AT1G01110 52.4 1.4e-120 430.3
HCH4g1441 . 1 385 IQD Protein Family AT3G16490 54.5 1.4e-77 287.0
HCH5g1306 . 1 380 IQD Protein Family AT3G16490 53.2 1.2e-71 267.3
HCH8g0696 . 1 397 IQD Protein Family AT3G16490 52.1 3.2e-69 259.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54