Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH13g1031 | ATGAGTAGCGAAATCGAAAGCCTTTGGATTTTCGCACTAGTTTACAAAGACACGGTTTTAACAAAAGAAAAAATCTTCTGCTCCTTACTAATACTTTCCCTAATATTTGTAGCTATTTCCATTTTGAACATGGCCTATCCTGGAGGCACAGCTTGGGGCAAATATTATTGGTGGAGACGTTCCATAACTAATTCTTCAAGTTCCAAACTCGTTATTCCCGGTCCGAGAGGTTTCCCACTGATCGGTAGCATGAATTTGATGACTAAATTGGCCCACCATCGGATTGCTTTTATGGCTGAATCTTTAAACGCCAAACGTCTCATGGCCTTTAGCCTTGGAAATACTCGAGTTATTGTTACATGCAATCCCGATGTTGCTAAAGAGATTCTCAATAACTCTGTTTTCGCTGACCGTCCGATCAAAGAATCGGCTTACAGTTTGATGTTTAATAGAGCCATTGGGTTCGCTCCCTATGGTTTCTACTGGAGAACCCTTCGTGGGATTTCTTCAAAACATCTCTTTTGTCCTAAACAAATCAAGGCCTCTGAATCTCAGCGTCGTGAAATCGCTACTCAAATGGTTATACTGTTTGGAAAACATGATTTTACGACTGAGAGTTTCTGCGTCAGAGATACACTGAAACGTGCTTCTTTAAATAACATGATGGGCTCTATTTTTGGTCGTGTTTACCAGCTGTCGGATTCCATAAATGATGAGGTGGAAGAGTTGAAGAAACTTGTAAATGAAGGGTATGAGCTATTGGGTTTATTGAATTGGTCTGACCATCTTTCATGTTTAGCTCATTTTGATGCTCAGAAAATTCGTTTTCGATGCTCTCAACTTGTTCCAAAAGTTAACCGTTTTGTCGGACGAATCATCGACGAACACCGCACGAAATTCAAGAACCAAGTCCTAGATTTCGTCGATGTTTTACTCTCTCTTCAAGGAACCGACAAACTCTCTGACTCCGATATGATTGCCGTTCTTTGGGAAATGATTTTTCGTGGGACAGACACGGTGGCAGTTTTAATGGAATGGATACTGGCCAGAATGGTACTTCACAACGAAATACAGAAAACGGTTCAAGAGGAGTTAGATAAAGTCGTCGGCAGAAGACGCAGCGTCGCTGAATCCGACATGTCGTCGTTGGTGTATCTGACGGCTGTCGTTAAGGAAGTTCTGAGGTTACATCCACCCGGTCCACTTCTCTCGTGGGCCCGCTTAGCAATTACTGATACAATCATCGATGGGTATCACGTGCCTCAGGGGACCACAGCAATGGTTAACATGTGGTCGATAGCAAGGGACCCACAAATATGGTCGGACCCACTCGAATTTATGCCCCAAAGGTTTGTCTCCGAATCTGGTGACGTGGAATTCTCAGTAATGGGTTCGGATCTTAAGTTGGCTCCGTTTGGATCCGGGAGAAGGGTTTGCCCCGGTAAGGCCTTGGCCTGGACAACTGTCACGTTCTGGGTGGCTACGCTTTTGCACGAATTTGAATGGCTGCCGTCCGATCAAAATCCCGTCGACTTATCAGAGGTTCTAAAGCTTTCCTCTGAGATGGCGAACCCACTCACTGTCAAAGTACGACCAAGGCGTAATTTATGCTTTTAG | 1617 | 44.09 | MSSEIESLWIFALVYKDTVLTKEKIFCSLLILSLIFVAISILNMAYPGGTAWGKYYWWRRSITNSSSSKLVIPGPRGFPLIGSMNLMTKLAHHRIAFMAESLNAKRLMAFSLGNTRVIVTCNPDVAKEILNNSVFADRPIKESAYSLMFNRAIGFAPYGFYWRTLRGISSKHLFCPKQIKASESQRREIATQMVILFGKHDFTTESFCVRDTLKRASLNNMMGSIFGRVYQLSDSINDEVEELKKLVNEGYELLGLLNWSDHLSCLAHFDAQKIRFRCSQLVPKVNRFVGRIIDEHRTKFKNQVLDFVDVLLSLQGTDKLSDSDMIAVLWEMIFRGTDTVAVLMEWILARMVLHNEIQKTVQEELDKVVGRRRSVAESDMSSLVYLTAVVKEVLRLHPPGPLLSWARLAITDTIIDGYHVPQGTTAMVNMWSIARDPQIWSDPLEFMPQRFVSESGDVEFSVMGSDLKLAPFGSGRRVCPGKALAWTTVTFWVATLLHEFEWLPSDQNPVDLSEVLKLSSEMANPLTVKVRPRRNLCF | 538 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 30164780 | 30166798 | - | evm.model.ptg000021l.1031 | HCH13g1031 | 557536 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH13g1031 | 538 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 472 | 481 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| HCH13g1031 | 538 | FunFam | Cytochrome P450 78A5 | 64 | 533 | - | - | |
| HCH13g1031 | 538 | PRINTS | P450 superfamily signature | 470 | 479 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1031 | 538 | PRINTS | P450 superfamily signature | 479 | 490 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1031 | 538 | PRINTS | P450 superfamily signature | 388 | 399 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1031 | 538 | PRINTS | P450 superfamily signature | 335 | 352 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1031 | 538 | SUPERFAMILY | Cytochrome P450 | 72 | 533 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1031 | 538 | Gene3D | Cytochrome P450 | 62 | 536 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1031 | 538 | PANTHER | CYTOCHROME P450 78A7-RELATED | 4 | 530 | IPR051996 | - | |
| HCH13g1031 | 538 | Pfam | Cytochrome P450 | 73 | 511 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1031 | 538 | CDD | CYP78 | 103 | 526 | - | - | |
| HCH13g1031 | 538 | PRINTS | E-class P450 group I signature | 429 | 453 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1031 | 538 | PRINTS | E-class P450 group I signature | 387 | 405 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1031 | 538 | PRINTS | E-class P450 group I signature | 324 | 341 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1031 | 538 | PRINTS | E-class P450 group I signature | 216 | 234 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1031 | 538 | PRINTS | E-class P450 group I signature | 344 | 370 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1031 | 538 | PRINTS | E-class P450 group I signature | 479 | 502 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1031 | 538 | PRINTS | E-class P450 group I signature | 469 | 479 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH13g1031 | HCH-Chr13:30164780 | HCH3g0127 | HCH-Chr3:811990 | 8.70E-142 | dispersed | |
| HCH13g1031 | HCH-Chr13:30164780 | HCH4g0157 | HCH-Chr4:876781 | 4.20E-144 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH13g1031 | K20619 | - | cit:102613914 | 753.436 |