Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1031 ATGAGTAGCGAAATCGAAAGCCTTTGGATTTTCGCACTAGTTTACAAAGACACGGTTTTAACAAAAGAAAAAATCTTCTGCTCCTTACTAATACTTTCCCTAATATTTGTAGCTATTTCCATTTTGAACATGGCCTATCCTGGAGGCACAGCTTGGGGCAAATATTATTGGTGGAGACGTTCCATAACTAATTCTTCAAGTTCCAAACTCGTTATTCCCGGTCCGAGAGGTTTCCCACTGATCGGTAGCATGAATTTGATGACTAAATTGGCCCACCATCGGATTGCTTTTATGGCTGAATCTTTAAACGCCAAACGTCTCATGGCCTTTAGCCTTGGAAATACTCGAGTTATTGTTACATGCAATCCCGATGTTGCTAAAGAGATTCTCAATAACTCTGTTTTCGCTGACCGTCCGATCAAAGAATCGGCTTACAGTTTGATGTTTAATAGAGCCATTGGGTTCGCTCCCTATGGTTTCTACTGGAGAACCCTTCGTGGGATTTCTTCAAAACATCTCTTTTGTCCTAAACAAATCAAGGCCTCTGAATCTCAGCGTCGTGAAATCGCTACTCAAATGGTTATACTGTTTGGAAAACATGATTTTACGACTGAGAGTTTCTGCGTCAGAGATACACTGAAACGTGCTTCTTTAAATAACATGATGGGCTCTATTTTTGGTCGTGTTTACCAGCTGTCGGATTCCATAAATGATGAGGTGGAAGAGTTGAAGAAACTTGTAAATGAAGGGTATGAGCTATTGGGTTTATTGAATTGGTCTGACCATCTTTCATGTTTAGCTCATTTTGATGCTCAGAAAATTCGTTTTCGATGCTCTCAACTTGTTCCAAAAGTTAACCGTTTTGTCGGACGAATCATCGACGAACACCGCACGAAATTCAAGAACCAAGTCCTAGATTTCGTCGATGTTTTACTCTCTCTTCAAGGAACCGACAAACTCTCTGACTCCGATATGATTGCCGTTCTTTGGGAAATGATTTTTCGTGGGACAGACACGGTGGCAGTTTTAATGGAATGGATACTGGCCAGAATGGTACTTCACAACGAAATACAGAAAACGGTTCAAGAGGAGTTAGATAAAGTCGTCGGCAGAAGACGCAGCGTCGCTGAATCCGACATGTCGTCGTTGGTGTATCTGACGGCTGTCGTTAAGGAAGTTCTGAGGTTACATCCACCCGGTCCACTTCTCTCGTGGGCCCGCTTAGCAATTACTGATACAATCATCGATGGGTATCACGTGCCTCAGGGGACCACAGCAATGGTTAACATGTGGTCGATAGCAAGGGACCCACAAATATGGTCGGACCCACTCGAATTTATGCCCCAAAGGTTTGTCTCCGAATCTGGTGACGTGGAATTCTCAGTAATGGGTTCGGATCTTAAGTTGGCTCCGTTTGGATCCGGGAGAAGGGTTTGCCCCGGTAAGGCCTTGGCCTGGACAACTGTCACGTTCTGGGTGGCTACGCTTTTGCACGAATTTGAATGGCTGCCGTCCGATCAAAATCCCGTCGACTTATCAGAGGTTCTAAAGCTTTCCTCTGAGATGGCGAACCCACTCACTGTCAAAGTACGACCAAGGCGTAATTTATGCTTTTAG 1617 44.09 MSSEIESLWIFALVYKDTVLTKEKIFCSLLILSLIFVAISILNMAYPGGTAWGKYYWWRRSITNSSSSKLVIPGPRGFPLIGSMNLMTKLAHHRIAFMAESLNAKRLMAFSLGNTRVIVTCNPDVAKEILNNSVFADRPIKESAYSLMFNRAIGFAPYGFYWRTLRGISSKHLFCPKQIKASESQRREIATQMVILFGKHDFTTESFCVRDTLKRASLNNMMGSIFGRVYQLSDSINDEVEELKKLVNEGYELLGLLNWSDHLSCLAHFDAQKIRFRCSQLVPKVNRFVGRIIDEHRTKFKNQVLDFVDVLLSLQGTDKLSDSDMIAVLWEMIFRGTDTVAVLMEWILARMVLHNEIQKTVQEELDKVVGRRRSVAESDMSSLVYLTAVVKEVLRLHPPGPLLSWARLAITDTIIDGYHVPQGTTAMVNMWSIARDPQIWSDPLEFMPQRFVSESGDVEFSVMGSDLKLAPFGSGRRVCPGKALAWTTVTFWVATLLHEFEWLPSDQNPVDLSEVLKLSSEMANPLTVKVRPRRNLCF 538
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 30164780 30166798 - evm.model.ptg000021l.1031 HCH13g1031 557536
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1031 538 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 472 481 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
HCH13g1031 538 FunFam Cytochrome P450 78A5 64 533 - -
HCH13g1031 538 PRINTS P450 superfamily signature 470 479 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g1031 538 PRINTS P450 superfamily signature 479 490 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g1031 538 PRINTS P450 superfamily signature 388 399 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g1031 538 PRINTS P450 superfamily signature 335 352 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g1031 538 SUPERFAMILY Cytochrome P450 72 533 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g1031 538 Gene3D Cytochrome P450 62 536 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g1031 538 PANTHER CYTOCHROME P450 78A7-RELATED 4 530 IPR051996 -
HCH13g1031 538 Pfam Cytochrome P450 73 511 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g1031 538 CDD CYP78 103 526 - -
HCH13g1031 538 PRINTS E-class P450 group I signature 429 453 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g1031 538 PRINTS E-class P450 group I signature 387 405 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g1031 538 PRINTS E-class P450 group I signature 324 341 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g1031 538 PRINTS E-class P450 group I signature 216 234 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g1031 538 PRINTS E-class P450 group I signature 344 370 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g1031 538 PRINTS E-class P450 group I signature 479 502 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH13g1031 538 PRINTS E-class P450 group I signature 469 479 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1031 HCH-Chr13:30164780 HCH3g0127 HCH-Chr3:811990 8.70E-142 dispersed
HCH13g1031 HCH-Chr13:30164780 HCH4g0157 HCH-Chr4:876781 4.20E-144 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1031 K20619 - cit:102613914 753.436