Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1112 ATGGATTCTGGCTCAGTTAATAATAACATCAGAGGAGTGCCCACAAACGGCGGTCGCTATCTTCAATACAATGTTTATGGAAATCTCTTTGAAGTTTCTAGAAAGTATCTTCCTCCTATTCGACCCGTTGGGAGAGGTGCTTATGGTATTGTTTGTGCTGCTTTGAATTCAGAAACAAATGAGGAGGTTGCAATTAAGAAGATTGGTAATGCATTTGACAATAGGATTGATGCTAAAAGAACGCTACGGGAGATCAAGCTTCATCAACATATGGATCATGAAAATATTGTTGCTCTTAAAGATATTATAAGACCTCCTCAGAAGGAGAACTTCAATGATGTCTACCTTGTTTACGAATTGATGGATACTGATCTAAATCAGATAATAAGGTCCAATCAACAGTTGACTGATGATCATTGTCGGTACTTTCTGTACCAGTTGTTAAGAGGGCTCAAGTACGTACATTCTGCTAATGTTCTGCACCGTGATCTGAAACCTAGCAATTTGTTCCTTAATGCTAATTGTGACCTAAAGATTGGAGACTTCGGGCTTGCAAGAACAACATCTGAAACTGATTTTATGACTGAGTATGTCGTTACTCGTTGGTATCGTGCACCAGAGTTACTTCTTAATTGTTCAGAGTACACTGGAGCTATAGATATTTGGTCCGTGGGTTGTATACTTGGTGAAATTATGCACAGGAAACCATTATTTCCTGGAAACGATTACGTTCATCAGCTAAAACTTATTACTGAGCTCATTGGCTCACCTGATGACTCCAGCCTTGGATTCTTACGGAGCGATAATCCTCGAAGATATTTTAGACAGCTTCCCCAATTTCCCAAACAACAATTTTCTACTAGATTTCCAACTATGTCTGCTGCTTCAGTAGACTTGCTGGAGAAGATGCTAGTCTTTGATCCTACTAAGCGCATTACAGTCGACGAGGCGCTGTCCCATCCCTACTTGGCTCCTCTTCACGATATCAATGAGGAGCCAGTATGTCCGAGGTGCTTCAGTTTTGCTTTCGAGCAACCGTCGTTTACTGAAGAAAATATCAAAGAACTTATATGGAGAGAATCTGTGAAATTCAACCCAGATCCTACTTATTGA 1113 40.16 MDSGSVNNNIRGVPTNGGRYLQYNVYGNLFEVSRKYLPPIRPVGRGAYGIVCAALNSETNEEVAIKKIGNAFDNRIDAKRTLREIKLHQHMDHENIVALKDIIRPPQKENFNDVYLVYELMDTDLNQIIRSNQQLTDDHCRYFLYQLLRGLKYVHSANVLHRDLKPSNLFLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTGAIDIWSVGCILGEIMHRKPLFPGNDYVHQLKLITELIGSPDDSSLGFLRSDNPRRYFRQLPQFPKQQFSTRFPTMSAASVDLLEKMLVFDPTKRITVDEALSHPYLAPLHDINEEPVCPRCFSFAFEQPSFTEENIKELIWRESVKFNPDPTY 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36576240 36582127 + evm.model.ptg000021l.1112 HCH13g1112 557617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1112 370 FunFam Mitogen-activated protein kinase 121 350 - -
HCH13g1112 370 ProSitePatterns MAP kinase signature. 72 175 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g1112 370 Pfam Protein kinase domain 41 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g1112 370 Gene3D Transferase(Phosphotransferase) domain 1 121 350 - -
HCH13g1112 370 ProSiteProfiles Protein kinase domain profile. 37 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g1112 370 Gene3D Phosphorylase Kinase; domain 1 20 360 - -
HCH13g1112 370 SMART serkin_6 37 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g1112 370 SUPERFAMILY Protein kinase-like (PK-like) 40 330 IPR011009 -
HCH13g1112 370 CDD STKc_TEY_MAPK 30 366 - -
HCH13g1112 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 30 359 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
HCH13g1112 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g1112 370 ProSitePatterns Protein kinases ATP-binding region signature. 43 67 IPR017441 GO:0005524(InterPro)
HCH13g1112 370 FunFam Mitogen-activated protein kinase 22 131 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1112 HCH-Chr13:36576240 HCH4g0122 HCH-Chr4:668730 8.60E-157 dispersed
HCH4g0746 HCH-Chr4:4811736 HCH13g1112 HCH-Chr13:36576240 6.50E-115 transposed
HCH13g1112 HCH-Chr13:36576240 HCH5g0539 HCH-Chr5:3699647 1.90E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81198 PF00069 Pkinase 2.70E-70 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1112 K20600 - csv:101215189 696.041