Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1112 ATGGATTCTGGCTCAGTTAATAATAACATCAGAGGAGTGCCCACAAACGGCGGTCGCTATCTTCAATACAATGTTTATGGAAATCTCTTTGAAGTTTCTAGAAAGTATCTTCCTCCTATTCGACCCGTTGGGAGAGGTGCTTATGGTATTGTTTGTGCTGCTTTGAATTCAGAAACAAATGAGGAGGTTGCAATTAAGAAGATTGGTAATGCATTTGACAATAGGATTGATGCTAAAAGAACGCTACGGGAGATCAAGCTTCATCAACATATGGATCATGAAAATATTGTTGCTCTTAAAGATATTATAAGACCTCCTCAGAAGGAGAACTTCAATGATGTCTACCTTGTTTACGAATTGATGGATACTGATCTAAATCAGATAATAAGGTCCAATCAACAGTTGACTGATGATCATTGTCGGTACTTTCTGTACCAGTTGTTAAGAGGGCTCAAGTACGTACATTCTGCTAATGTTCTGCACCGTGATCTGAAACCTAGCAATTTGTTCCTTAATGCTAATTGTGACCTAAAGATTGGAGACTTCGGGCTTGCAAGAACAACATCTGAAACTGATTTTATGACTGAGTATGTCGTTACTCGTTGGTATCGTGCACCAGAGTTACTTCTTAATTGTTCAGAGTACACTGGAGCTATAGATATTTGGTCCGTGGGTTGTATACTTGGTGAAATTATGCACAGGAAACCATTATTTCCTGGAAACGATTACGTTCATCAGCTAAAACTTATTACTGAGCTCATTGGCTCACCTGATGACTCCAGCCTTGGATTCTTACGGAGCGATAATCCTCGAAGATATTTTAGACAGCTTCCCCAATTTCCCAAACAACAATTTTCTACTAGATTTCCAACTATGTCTGCTGCTTCAGTAGACTTGCTGGAGAAGATGCTAGTCTTTGATCCTACTAAGCGCATTACAGTCGACGAGGCGCTGTCCCATCCCTACTTGGCTCCTCTTCACGATATCAATGAGGAGCCAGTATGTCCGAGGTGCTTCAGTTTTGCTTTCGAGCAACCGTCGTTTACTGAAGAAAATATCAAAGAACTTATATGGAGAGAATCTGTGAAATTCAACCCAGATCCTACTTATTGA 1113 40.16 MDSGSVNNNIRGVPTNGGRYLQYNVYGNLFEVSRKYLPPIRPVGRGAYGIVCAALNSETNEEVAIKKIGNAFDNRIDAKRTLREIKLHQHMDHENIVALKDIIRPPQKENFNDVYLVYELMDTDLNQIIRSNQQLTDDHCRYFLYQLLRGLKYVHSANVLHRDLKPSNLFLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTGAIDIWSVGCILGEIMHRKPLFPGNDYVHQLKLITELIGSPDDSSLGFLRSDNPRRYFRQLPQFPKQQFSTRFPTMSAASVDLLEKMLVFDPTKRITVDEALSHPYLAPLHDINEEPVCPRCFSFAFEQPSFTEENIKELIWRESVKFNPDPTY 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36576240 36582127 + evm.model.ptg000021l.1112 HCH13g1112 557617

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1112 370 FunFam Mitogen-activated protein kinase 121 350 - -
HCH13g1112 370 ProSitePatterns MAP kinase signature. 72 175 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g1112 370 Pfam Protein kinase domain 41 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g1112 370 Gene3D Transferase(Phosphotransferase) domain 1 121 350 - -
HCH13g1112 370 ProSiteProfiles Protein kinase domain profile. 37 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g1112 370 Gene3D Phosphorylase Kinase; domain 1 20 360 - -
HCH13g1112 370 SMART serkin_6 37 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g1112 370 SUPERFAMILY Protein kinase-like (PK-like) 40 330 IPR011009 -
HCH13g1112 370 CDD STKc_TEY_MAPK 30 366 - -
HCH13g1112 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 30 359 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
HCH13g1112 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g1112 370 ProSitePatterns Protein kinases ATP-binding region signature. 43 67 IPR017441 GO:0005524(InterPro)
HCH13g1112 370 FunFam Mitogen-activated protein kinase 22 131 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1112 K20600 - - csv:101215189 696.041
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1112 HCH-Chr13:36576240 HCH4g0122 HCH-Chr4:668730 8.60E-157 dispersed
HCH4g0746 HCH-Chr4:4811736 HCH13g1112 HCH-Chr13:36576240 6.50E-115 transposed
HCH13g1112 HCH-Chr13:36576240 HCH5g0539 HCH-Chr5:3699647 1.90E-180 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH4g0746 . 1 370 MAP Kinase Gene Family AT1G10210 87.3 1.2e-179 625.9
HCH13g1391 . 1 362 MAP Kinase Gene Family AT1G10210 74.4 4.9e-160 560.8
HCH13g1112 . 12 330 MAP Kinase Gene Family AT1G10210 59.4 1.3e-112 403.3
HCH4g0122 . 48 352 MAP Kinase Gene Family AT1G10210 61.2 4.6e-110 394.8
HCH3g1283 . 15 329 MAP Kinase Gene Family AT1G10210 60.3 3.0e-109 392.1
HCH5g0539 . 18 381 MAP Kinase Gene Family AT1G10210 53.2 6.7e-109 391.0
HCH7g0055 . 66 350 MAP Kinase Gene Family AT1G10210 50.2 5.9e-81 298.1
HCH4g0746 . 1 362 MAP Kinase Gene Family AT1G59580 86.5 6.7e-181 630.2
HCH13g1391 . 1 364 MAP Kinase Gene Family AT1G59580 76.0 2.1e-166 582.0
HCH13g1112 . 12 367 MAP Kinase Gene Family AT1G59580 55.0 6.4e-115 411.0
HCH4g0122 . 48 391 MAP Kinase Gene Family AT1G59580 56.2 1.9e-111 399.4
HCH5g0539 . 18 373 MAP Kinase Gene Family AT1G59580 54.2 2.5e-111 399.1
HCH3g1283 . 25 370 MAP Kinase Gene Family AT1G59580 55.9 1.4e-109 393.3
HCH3g1283 . 11 370 MAP Kinase Gene Family AT3G45640 81.4 3.3e-180 627.9
HCH4g0122 . 36 392 MAP Kinase Gene Family AT3G45640 76.8 1.1e-167 586.3
HCH5g0539 . 21 372 MAP Kinase Gene Family AT3G45640 66.2 5.6e-148 520.8
HCH13g1112 . 13 366 MAP Kinase Gene Family AT3G45640 64.4 3.4e-145 511.5
HCH13g1391 . 19 360 MAP Kinase Gene Family AT3G45640 56.5 1.5e-113 406.4
HCH4g0746 . 19 324 MAP Kinase Gene Family AT3G45640 61.9 5.9e-113 404.4
HCH7g0055 . 66 396 MAP Kinase Gene Family AT3G45640 50.6 3.0e-93 339.0
HCH11g0743 . 22 352 MAP Kinase Gene Family AT3G45640 50.2 4.4e-92 335.1
HCH5g0539 . 17 375 MAP Kinase Gene Family AT4G01370 84.4 1.8e-186 648.7
HCH13g1112 . 11 366 MAP Kinase Gene Family AT4G01370 85.4 4.5e-185 644.0
HCH4g0122 . 40 391 MAP Kinase Gene Family AT4G01370 73.4 1.7e-160 562.4
HCH3g1283 . 15 368 MAP Kinase Gene Family AT4G01370 68.2 2.3e-149 525.4
HCH4g0746 . 10 324 MAP Kinase Gene Family AT4G01370 60.7 4.9e-115 411.4
HCH13g1391 . 9 361 MAP Kinase Gene Family AT4G01370 55.0 4.1e-114 408.3
HCH2g0905 . 30 361 MAP Kinase Gene Family AT4G01370 52.4 5.8e-100 361.3
HCH6g1629 . 31 362 MAP Kinase Gene Family AT4G01370 50.3 1.6e-97 353.2
HCH5g0539 . 1 372 MAP Kinase Gene Family AT4G11330 79.3 2.6e-177 618.2
HCH13g1112 . 7 369 MAP Kinase Gene Family AT4G11330 76.0 1.5e-169 592.4
HCH4g0122 . 30 390 MAP Kinase Gene Family AT4G11330 69.6 5.3e-154 540.8
HCH3g1283 . 15 367 MAP Kinase Gene Family AT4G11330 65.5 5.5e-143 504.2
HCH4g0746 . 10 324 MAP Kinase Gene Family AT4G11330 60.7 6.0e-113 404.4
HCH13g1391 . 9 360 MAP Kinase Gene Family AT4G11330 54.6 6.2e-110 394.4
HCH2g0905 . 30 360 MAP Kinase Gene Family AT4G11330 51.1 1.4e-93 340.1
HCH7g0055 . 66 396 MAP Kinase Gene Family AT4G11330 50.8 1.2e-92 337.0
HCH4g0122 . 1 394 MAP Kinase Gene Family AT2G43790 88.4 7.7e-204 706.4
HCH3g1283 . 11 369 MAP Kinase Gene Family AT2G43790 77.5 1.5e-170 595.9
HCH5g0539 . 16 373 MAP Kinase Gene Family AT2G43790 70.7 2.7e-156 548.5
HCH13g1112 . 9 367 MAP Kinase Gene Family AT2G43790 68.5 9.9e-151 530.0
HCH4g0746 . 19 324 MAP Kinase Gene Family AT2G43790 61.2 1.3e-113 406.8
HCH13g1391 . 19 361 MAP Kinase Gene Family AT2G43790 54.9 1.1e-112 403.7
HCH6g1629 . 31 361 MAP Kinase Gene Family AT2G43790 52.3 9.1e-96 347.4
HCH2g0905 . 30 361 MAP Kinase Gene Family AT2G43790 52.1 2.6e-95 345.9
HCH8g1125 . 139 470 MAP Kinase Gene Family AT2G43790 52.0 4.5e-95 345.1
HCH7g0055 . 66 397 MAP Kinase Gene Family AT2G43790 51.5 2.2e-94 342.8
HCH11g0743 . 22 353 MAP Kinase Gene Family AT2G43790 50.6 1.2e-92 337.0
HCH13g1391 . 1 365 MAP Kinase Gene Family AT2G18170 83.6 1.2e-182 636.0
HCH4g0746 . 1 368 MAP Kinase Gene Family AT2G18170 78.0 3.2e-172 601.3
HCH4g0122 . 48 393 MAP Kinase Gene Family AT2G18170 55.5 1.9e-116 416.0
HCH5g0539 . 18 373 MAP Kinase Gene Family AT2G18170 54.9 2.5e-116 415.6
HCH13g1112 . 12 367 MAP Kinase Gene Family AT2G18170 55.2 9.6e-116 413.7
HCH3g1283 . 15 368 MAP Kinase Gene Family AT2G18170 55.3 4.5e-113 404.8
HCH8g1125 . 2 623 MAP Kinase Gene Family AT1G18150 70.2 9.3e-230 793.1
HCH11g0743 . 3 495 MAP Kinase Gene Family AT1G18150 70.5 4.5e-200 694.5
HCH6g1629 . 12 415 MAP Kinase Gene Family AT1G18150 79.7 1.1e-198 689.9
HCH7g0055 . 39 464 MAP Kinase Gene Family AT1G18150 76.4 1.8e-196 682.6
HCH2g0905 . 11 416 MAP Kinase Gene Family AT1G18150 76.2 2.0e-192 669.1
HCH6g0615 . 1 418 MAP Kinase Gene Family AT1G18150 70.7 1.2e-181 633.3
HCH4g0122 . 68 395 MAP Kinase Gene Family AT1G18150 51.6 5.1e-95 345.5
HCH3g1283 . 45 368 MAP Kinase Gene Family AT1G18150 50.2 1.8e-92 337.0
HCH8g1125 . 119 624 MAP Kinase Gene Family AT3G18040 81.3 6.1e-238 820.1
HCH11g0743 . 2 490 MAP Kinase Gene Family AT3G18040 74.3 4.4e-212 734.2
HCH6g1629 . 10 415 MAP Kinase Gene Family AT3G18040 82.8 5.2e-205 710.7
HCH7g0055 . 47 452 MAP Kinase Gene Family AT3G18040 79.3 3.1e-197 684.9
HCH2g0905 . 11 416 MAP Kinase Gene Family AT3G18040 78.1 2.9e-195 678.3
HCH6g0615 . 13 418 MAP Kinase Gene Family AT3G18040 75.1 1.2e-185 646.4
HCH3g1283 . 45 368 MAP Kinase Gene Family AT3G18040 51.2 3.7e-94 342.4
HCH4g0122 . 68 395 MAP Kinase Gene Family AT3G18040 50.7 1.9e-93 340.1
HCH4g0122 . 34 391 MAP Kinase Gene Family AT3G59790 75.1 6.8e-160 560.5
HCH3g1283 . 9 368 MAP Kinase Gene Family AT3G59790 66.8 4.4e-143 504.6
HCH5g0539 . 6 375 MAP Kinase Gene Family AT3G59790 64.3 6.4e-142 500.7
HCH13g1112 . 9 367 MAP Kinase Gene Family AT3G59790 61.3 5.4e-133 471.1
HCH13g1391 . 1 361 MAP Kinase Gene Family AT3G59790 50.7 1.1e-104 377.1
HCH4g0746 . 1 324 MAP Kinase Gene Family AT3G59790 55.2 6.9e-104 374.4
HCH13g1112 . 11 253 MAP Kinase Gene Family AT1G01560 84.8 1.1e-121 433.0
HCH5g0539 . 17 259 MAP Kinase Gene Family AT1G01560 84.8 1.3e-120 429.5
HCH4g0122 . 41 278 MAP Kinase Gene Family AT1G01560 76.5 5.5e-108 387.5
HCH3g1283 . 15 254 MAP Kinase Gene Family AT1G01560 71.8 4.2e-100 361.3
HCH4g0746 . 10 249 MAP Kinase Gene Family AT1G01560 61.7 1.3e-85 313.2
HCH13g1391 . 9 248 MAP Kinase Gene Family AT1G01560 61.9 5.6e-84 307.8
HCH2g0905 . 30 245 MAP Kinase Gene Family AT1G01560 56.5 6.2e-67 251.1
HCH11g0743 . 22 237 MAP Kinase Gene Family AT1G01560 56.7 1.5e-65 246.5
HCH6g0615 . 29 247 MAP Kinase Gene Family AT1G01560 53.4 6.4e-64 241.1
HCH7g0055 . 66 281 MAP Kinase Gene Family AT1G01560 54.6 1.1e-63 240.4
HCH5g0539 . 7 373 MAP Kinase Gene Family AT2G46070 79.3 1.6e-175 612.5
HCH13g1112 . 3 367 MAP Kinase Gene Family AT2G46070 76.4 1.3e-169 592.8
HCH4g0122 . 35 392 MAP Kinase Gene Family AT2G46070 66.6 8.0e-148 520.4
HCH3g1283 . 14 369 MAP Kinase Gene Family AT2G46070 61.9 9.2e-136 480.3
HCH4g0746 . 11 324 MAP Kinase Gene Family AT2G46070 57.4 1.2e-103 373.6
HCH13g1391 . 19 361 MAP Kinase Gene Family AT2G46070 52.9 4.6e-103 371.7
HCH5g0539 . 18 370 MAP Kinase Gene Family AT1G07880 75.4 6.7e-162 567.0
HCH13g1112 . 12 364 MAP Kinase Gene Family AT1G07880 73.9 3.4e-158 554.7
HCH4g0122 . 39 388 MAP Kinase Gene Family AT1G07880 70.4 1.7e-152 535.8
HCH3g1283 . 15 363 MAP Kinase Gene Family AT1G07880 67.1 4.8e-144 507.7
HCH4g0746 . 19 324 MAP Kinase Gene Family AT1G07880 61.9 6.8e-114 407.5
HCH13g1391 . 19 358 MAP Kinase Gene Family AT1G07880 56.9 1.5e-113 406.4
HCH2g0905 . 28 358 MAP Kinase Gene Family AT1G07880 51.4 7.1e-95 344.4
HCH13g1391 . 1 362 MAP Kinase Gene Family AT4G36450 78.8 2.3e-170 595.1
HCH4g0746 . 1 361 MAP Kinase Gene Family AT4G36450 76.2 3.2e-164 574.7
HCH13g1112 . 12 366 MAP Kinase Gene Family AT4G36450 55.5 8.8e-114 407.1
HCH5g0539 . 18 372 MAP Kinase Gene Family AT4G36450 54.6 2.6e-113 405.6
HCH4g0122 . 48 390 MAP Kinase Gene Family AT4G36450 54.9 3.7e-112 401.7
HCH3g1283 . 25 367 MAP Kinase Gene Family AT4G36450 54.7 2.9e-109 392.1
HCH8g1125 . 91 623 MAP Kinase Gene Family AT1G73670 74.1 3.6e-226 781.2
HCH11g0743 . 5 495 MAP Kinase Gene Family AT1G73670 70.0 2.7e-197 685.3
HCH6g1629 . 7 422 MAP Kinase Gene Family AT1G73670 76.9 3.9e-196 681.4
HCH7g0055 . 42 452 MAP Kinase Gene Family AT1G73670 77.6 3.6e-194 674.9
HCH2g0905 . 6 431 MAP Kinase Gene Family AT1G73670 74.2 3.7e-191 664.8
HCH6g0615 . 8 421 MAP Kinase Gene Family AT1G73670 72.2 3.9e-180 628.2
HCH4g0122 . 68 395 MAP Kinase Gene Family AT1G73670 51.3 2.0e-91 333.6
HCH6g1629 . 1 564 MAP Kinase Gene Family AT5G19010 81.0 2.4e-267 917.9
HCH2g0905 . 1 483 MAP Kinase Gene Family AT5G19010 70.8 1.2e-202 703.0
HCH7g0055 . 36 588 MAP Kinase Gene Family AT5G19010 65.5 3.5e-202 701.4
HCH8g1125 . 112 525 MAP Kinase Gene Family AT5G19010 80.2 5.9e-197 684.1
HCH6g0615 . 5 483 MAP Kinase Gene Family AT5G19010 67.3 1.8e-190 662.5
HCH11g0743 . 5 405 MAP Kinase Gene Family AT5G19010 76.9 5.0e-188 654.4
HCH4g0122 . 68 391 MAP Kinase Gene Family AT5G19010 53.0 4.2e-94 342.4
HCH3g1283 . 36 368 MAP Kinase Gene Family AT5G19010 51.0 1.6e-93 340.5
HCH4g0746 . 38 322 MAP Kinase Gene Family AT5G19010 51.0 3.7e-82 302.8
HCH11g0743 . 1 413 MAP Kinase Gene Family AT2G01450 76.0 2.0e-190 662.1
HCH8g1125 . 119 593 MAP Kinase Gene Family AT2G01450 68.6 1.1e-188 656.4
HCH2g0905 . 11 442 MAP Kinase Gene Family AT2G01450 68.6 8.1e-179 623.6
HCH6g1629 . 11 422 MAP Kinase Gene Family AT2G01450 70.9 2.3e-178 622.1
HCH7g0055 . 47 452 MAP Kinase Gene Family AT2G01450 71.1 2.1e-174 609.0
HCH6g0615 . 16 421 MAP Kinase Gene Family AT2G01450 70.4 8.6e-173 603.6
HCH6g0615 . 4 597 MAP Kinase Gene Family AT1G53510 68.1 3.7e-229 791.2
HCH2g0905 . 1 611 MAP Kinase Gene Family AT1G53510 64.6 1.8e-215 745.7
HCH7g0055 . 36 639 MAP Kinase Gene Family AT1G53510 62.0 8.0e-208 720.3
HCH6g1629 . 1 417 MAP Kinase Gene Family AT1G53510 76.0 9.5e-193 670.2
HCH8g1125 . 115 525 MAP Kinase Gene Family AT1G53510 74.9 8.6e-186 647.1
HCH11g0743 . 3 408 MAP Kinase Gene Family AT1G53510 72.7 3.9e-178 621.7
HCH4g0122 . 68 391 MAP Kinase Gene Family AT1G53510 50.6 6.1e-91 332.0
HCH6g0615 . 8 415 MAP Kinase Gene Family AT3G14720 86.8 4.2e-208 720.7
HCH2g0905 . 6 423 MAP Kinase Gene Family AT3G14720 81.8 3.1e-203 704.5
HCH7g0055 . 36 454 MAP Kinase Gene Family AT3G14720 81.3 1.6e-202 702.2
HCH6g1629 . 1 414 MAP Kinase Gene Family AT3G14720 79.0 6.4e-196 680.2
HCH8g1125 . 115 522 MAP Kinase Gene Family AT3G14720 78.7 5.8e-189 657.1
HCH11g0743 . 1 405 MAP Kinase Gene Family AT3G14720 75.6 4.0e-182 634.4
HCH4g0122 . 68 391 MAP Kinase Gene Family AT3G14720 51.2 2.8e-95 345.9
HCH2g0905 . 1 428 MAP Kinase Gene Family AT2G42880 87.9 9.4e-225 776.2
HCH7g0055 . 36 456 MAP Kinase Gene Family AT2G42880 89.8 6.1e-224 773.5
HCH6g0615 . 4 446 MAP Kinase Gene Family AT2G42880 78.2 1.7e-205 712.2
HCH6g1629 . 1 464 MAP Kinase Gene Family AT2G42880 73.7 1.6e-203 705.7
HCH8g1125 . 112 525 MAP Kinase Gene Family AT2G42880 78.5 7.0e-196 680.2
HCH11g0743 . 2 408 MAP Kinase Gene Family AT2G42880 74.5 4.3e-185 644.4
HCH4g0122 . 68 391 MAP Kinase Gene Family AT2G42880 52.7 5.9e-94 341.7
HCH3g1283 . 45 368 MAP Kinase Gene Family AT2G42880 51.1 1.7e-93 340.1
HCH5g0539 . 49 372 MAP Kinase Gene Family AT2G42880 50.2 8.0e-91 331.3
HCH4g0746 . 38 322 MAP Kinase Gene Family AT2G42880 51.4 1.1e-84 310.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000508 2 3 4 3 3 3 6 2 2 3 3 3 6 3 3 6 3 7 5 2 3 2 3 3 3 2 3 8 8 3 110
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81198 PF00069 Pkinase 2.70E-70 CL0016 HCH PK