Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1115 ATGGGTTTCCCCGTCGGCTGCACGGAGGTTTTTTTCCCGACCATTTTCCTTCACATTCTCTGTCTTCTGGGTTTCATCAGAAAACTCATTTTATCACTTTTTCGCTTCATGGGTGTTCCCGAATTCTTTGAAACAGACATGCTCCATTGGCCAGAAGTTCATCATACCCGATTACCCGTTAACCCACCCGCATCCGCTCTCCTGATCCGGGAATTATTACCCGTCATTAAATTCTCCGACCTGAATGATGTTTCCGGCGCCGGTGACCTACCGGAAAGTTGCGCTGTTTGTCTCTATGAGTTCGAAGGTGGAGAAGAAATCAGGTGGTTGACGAATTGTAAACACATTTTTCACAGAGCGTGTCTTGACCGTTGGATGGATCATGATCAGAAGACGTGTCCTCTTTGTAGAACTCCGTTCGTGCCTGATGCGATGCAAGATGAGTTTAATCAACGGCTATGGGCGGCTTCCGGAATTTCTGATTTTGATAATGATTACACCTCGGTTTTAGGTTAG 516 46.32 MGFPVGCTEVFFPTIFLHILCLLGFIRKLILSLFRFMGVPEFFETDMLHWPEVHHTRLPVNPPASALLIRELLPVIKFSDLNDVSGAGDLPESCAVCLYEFEGGEEIRWLTNCKHIFHRACLDRWMDHDQKTCPLCRTPFVPDAMQDEFNQRLWAASGISDFDNDYTSVLG 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36716294 36716809 + evm.model.ptg000021l.1115 HCH13g1115 557620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1115 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 144 IPR013083 -
HCH13g1115 171 PANTHER RING ZINC FINGER PROTEIN-RELATED 10 146 - -
HCH13g1115 171 Pfam Ring finger domain 93 137 IPR001841 -
HCH13g1115 171 SUPERFAMILY RING/U-box 93 143 - -
HCH13g1115 171 SMART ring_2 94 136 IPR001841 -
HCH13g1115 171 FunFam RING-H2 finger protein ATL73 69 144 - -
HCH13g1115 171 ProSiteProfiles Zinc finger RING-type profile. 94 137 IPR001841 -
HCH13g1115 171 SMART ringv_2 93 137 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1115 HCH-Chr13:36716294 HCH14g0649 HCH-Chr14:35156967 1.70E-11 dispersed
HCH5g0617 HCH-Chr5:4347430 HCH13g1115 HCH-Chr13:36716294 7.60E-12 transposed
HCH13g1115 HCH-Chr13:36716294 HCH5g0530 HCH-Chr5:3634251 5.90E-44 wgd
HCH13g1115 HCH-Chr13:36716294 HCH7g1638 HCH-Chr7:48529044 4.60E-36 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1115 K16281 - cit:102614213 256.529