Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1116 ATGGATAACCTTCTAAGAAAGCAAGCTATCATTGGCTGCTTTCTTCTGTCACTTTTCTCTTCTTTTTCGGCTTTCTCATTTGCGTTGTCTGATGTTGAAGCTTCTTATATTACTCGCCGTCAACTTCTAGCTCTCAAAGATCATGAGGACCTTCCTAACGACTTTGAATTCGAGGTCGATCTTGTCGTCACTTTCGCAAACGAAAGGCTGAAAAGATCTTACGTTGCTCTCCAAGCATGGAAGAAAGCTATTTACTCTGATCCCTTCAATACCACTGGCAATTGGGTCGGTGCCAATGTGTGTTCTTACAATGGAGTTTTCTGTGCTCCTGCTCTTGATGATCCCAAGCTGAAGGTTGTCGCTGGTGTAGATTTGAACCATGCCGATATCGCAGGCTACCTCCCACCGGAGCTTGGTCTCTTGAATGATATGGCTCTTTTCCACATCAATTCCAACAGGTTTTGTGGAATTATTCCTGAAAGCTTCTCAAAGCTTACTCTCATGCATGAGTTTGATGTCAGCAACAATCGCTTCGTTGGTTCTTTCCCAGAAGTTGTTCTGAAATGGCCAAATGTCAAGTACCTTGATATTAGATACAATGACTTTGAAGGAAAATTGCCCCCACAGCTTTTTGTCAAAGATTTTGATGCTATATTCTTGAACAACAACAGGTTTTCCTCTATCATCCCAGAAACCATTGGAAACTCCACTGTCTCAGTTGTTTCATTTGCAAACAATGAATTCCATGGATGCATTCCGAAAACCATCGGCCAAATGCAGAATTTGAATGAAATAATCTTCATGGGAAACAGATTTGGTGGTTGTTTCCCTGAAGAAATTGGAAAACTAAGCAATGTGACAGTGTTTGATGCCAGTTTCAATGGTTTTGTGGGGGTGTTGCCAAGCAGCCTATCTGGTTTGAAGAGTTTGGAGAGATTGGATATTGCCCATAACAAATTGACAGGACTGGTTTCTAACAACATTTGCAAATTGCCTAAGTTGTTGAATTTCACTTTCTCTTACAATTATTTCAATGGAGAGGATCAAGAATGTATCCCATCAAAGGAATCTAAGATGGTTTTGGATGATGCAGAGAATTGTTTGGCAAATAGACCGAGGCAGAAAGAGGCTGATAGGTGCATTGCTTCTGTGGTGTCAAAACCTGTGAATTGTAGTAAATATTGTTCTTCTGGATCTTCTTCCTCTCATCCTACTCCTTTGATCCCAACCACACCAGAGGATCCGCATGGCCAATCTCCAACACCAAGGCAGAGGTCACCACCATCTACTTCTCCTTCGAATCCATCGAACCCATCGAACCCGACTCCGGGGAGCGATAATAATTCACCACATTCAGCTCAGTCACCTGATCCATATGTTCAATCTCCTGTTCAAAGGTCTAGATCTCCTTCACCTCCTGTCAATTCCTCTCCACCTAAAGTTGATCAATCCTCTCCACCACCATCAACTCCTACTCAATCCCCTCAACCTCACGTCAACTCTCCACCACCCTCCTTCCAGTCTCCGTCACCACCGGTCCAGTCTCTACCACCCCCCGTCCAGTCTCCATCACCACCGGTGCACTCCCCACCACCCCCCGTTCACTCTCCCCCACCACCGGTGCACTCCCCCCCACCACCGGTGCACTCCCCCCCACCACCGGTCCACTCTCCCCCACCACCGGTGCACTCCCCACCACCACCGGTCCACTCTCCCCCACCACCGGTCCACTCCCCACCACCACCGGTCCACTCTCCCCCACCACCCGTCCACTCTCCCCCACCACCCGTCCACTCACCACCGCCACCGGTCCACTCTCCTCCACCACCCGTCCACTCTCCTCCACCGCCCTTCTATTCTCCTCCACCGCCCGTCTACTCGCCACCACCGCCACCGGTCTACTCTCCACCACCACCACCAGTCCACTCCCCACCCCCCCCTGTGTACTCTCCACCACCACCGGTCCACTCTCCACCGCCCCCCGTATATTCTCCACCACCACCGCCTCCAGTCTTTTCTCCACCACCTCCGGCCTCTTCTCCGCCACCACCAACTCCGGACTTCGGTGACATTATCCTCCCACCAAATCTCGGGTTTCAATACTCATCACCACCTCCACCAATGTTTCCCGGCTACTGA 2139 49.42 MDNLLRKQAIIGCFLLSLFSSFSAFSFALSDVEASYITRRQLLALKDHEDLPNDFEFEVDLVVTFANERLKRSYVALQAWKKAIYSDPFNTTGNWVGANVCSYNGVFCAPALDDPKLKVVAGVDLNHADIAGYLPPELGLLNDMALFHINSNRFCGIIPESFSKLTLMHEFDVSNNRFVGSFPEVVLKWPNVKYLDIRYNDFEGKLPPQLFVKDFDAIFLNNNRFSSIIPETIGNSTVSVVSFANNEFHGCIPKTIGQMQNLNEIIFMGNRFGGCFPEEIGKLSNVTVFDASFNGFVGVLPSSLSGLKSLERLDIAHNKLTGLVSNNICKLPKLLNFTFSYNYFNGEDQECIPSKESKMVLDDAENCLANRPRQKEADRCIASVVSKPVNCSKYCSSGSSSSHPTPLIPTTPEDPHGQSPTPRQRSPPSTSPSNPSNPSNPTPGSDNNSPHSAQSPDPYVQSPVQRSRSPSPPVNSSPPKVDQSSPPPSTPTQSPQPHVNSPPPSFQSPSPPVQSLPPPVQSPSPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPFYSPPPPVYSPPPPPVYSPPPPPVHSPPPPVYSPPPPVHSPPPPVYSPPPPPPVFSPPPPASSPPPPTPDFGDIILPPNLGFQYSSPPPPMFPGY 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36805619 36807757 - evm.model.ptg000021l.1116 HCH13g1116 557621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1116 712 MobiDBLite consensus disorder prediction 395 614 - -
HCH13g1116 712 Pfam Leucine rich repeat N-terminal domain 76 108 IPR013210 -
HCH13g1116 712 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 618 IPR051582 -
HCH13g1116 712 Gene3D Ribonuclease Inhibitor 239 382 IPR032675 -
HCH13g1116 712 MobiDBLite consensus disorder prediction 472 614 - -
HCH13g1116 712 Gene3D Ribonuclease Inhibitor 71 238 IPR032675 -
HCH13g1116 712 FunFam Pollen-specific leucine-rich repeat extensin-like protein 1 73 372 - -
HCH13g1116 712 Pfam Leucine Rich Repeat 309 331 IPR001611 GO:0005515(InterPro)
HCH13g1116 712 SUPERFAMILY L domain-like 75 366 - -
HCH13g1116 712 MobiDBLite consensus disorder prediction 630 690 - -
HCH13g1116 712 MobiDBLite consensus disorder prediction 408 439 - -
HCH13g1116 712 MobiDBLite consensus disorder prediction 630 712 - -
HCH13g1116 712 MobiDBLite consensus disorder prediction 440 471 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0512 HCH-Chr10:4145076 HCH13g1116 HCH-Chr13:36805619 6.90E-19 dispersed
HCH12g0330 HCH-Chr12:1904102 HCH13g1116 HCH-Chr13:36805619 1.20E-41 dispersed
HCH12g0665 HCH-Chr12:4054514 HCH13g1116 HCH-Chr13:36805619 1.20E-64 dispersed
HCH13g1116 HCH-Chr13:36805619 HCH7g0138 HCH-Chr7:929134 5.20E-33 dispersed
HCH13g1116 HCH-Chr13:36805619 HCH8g0769 HCH-Chr8:44314220 5.90E-45 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1116 - - - 0.0