Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH13g1126 | ATGGATTTGGGATTGGCGTTTGCTATATTTACAGCAGTAACAGCATATCTTATTTGGTTCACGTTCATATCAAGATCACTGAAAGGGCCTCAGATGTGGCCATTGTTGGGAAGCCTTCCGGGTGTTATTGAAAATTGTGATCGTTTGCATGATTGGATCTGCGATAATCTTCGCGCGTGCGGTGGCACGTACCAGACTTGCATTTGGGCAATCCCTTTTTTTGCTAAAAAACAGGGGCTCGTGACTGTCACGTGTGACCCGAGAAATCTTGAACATATTCTCAAAACCCGGTTCGACAATTACCCTAAGGGACCCACTTGGCAAGCTGTTTTTCACGAACTTCTTGGTGAAGGCATCTTTAATTCTGATGGTGACACGTGGGTTTTCCAGAGGAAGACTGCCGCACTGGAATTTACCACCAGGACTCTACGCCAAGCCATGTCTAGATGGGTCAGTCGAGCCATTAAGCTTAGGTTTTGCCCCGTTCTCGAGGACGCCGAGCTGAAGTCGAAGACCATTGATCTACAAGATCTTTTGTTACGGCTTACTTTTGATAATATTTGCGGCTTGGCTTTCGGGAAGGATCCGCAGACTTGCGCGCCGGGTTTCCCCGAGAACAGCTTCGCTATGGCTTTTGATCGAGCCACGGAAGCTTCTTTACAGAGGTTTATTATGCCTGAAGTTTTGTGGAAATTCAAAAAATGGCTTCGGCTTGGAATGGAAGTGAACTTGAGCCGAAGCCTTGTGCACATCGAGGAGTATTTATCCAATGTGATTGATTCACGTAAGCTCGAGTTGCTGAATCAGCGAAAGGATTCCAATCCCCATGATGATTTGCTTTCCCGTTTCATGAAGAAAAAAGAATGCTACTCCAATGACTTCCTCCGCAACGTGGCACTCAATTTCATCCTCGCTGGACGTGACACGTCATCCGTAGCTCTCTGCTGGTTCTTCTGGCTCATCACTCAAAACCCTATCATCGAGGAGAAAGTTTTGACTGAGATATGCACGGTTCTGATGGAGACACGTGGCGACGACGTGGCATCCTGGTTGGATGAGCCGTTAGGGTTTGAGGAAGTTGATCGTTTGTTATACCTAAAAGCCGCGCTCACCGAAACCCTAAGGCTCTACCCGTCGGTGCCGGAGGACTCGAAGCACGTCGTTGCCGACGACGTGCTCCCCGACGGAACATTCGTTCCTGCTGGCTCTTCAATAACATATTCTATATATTCAACGGGACGGATGAAGTCCACGTGGGGCGAGGATTGCATGGAATTTCGTCCGGAGAGATGGTTATCACCGGACGGCAAGAAATTCATCATGCATAATTCTTACAAATTCGTAGCATTCAATGCAGGACCGAGGATATGTTTAGGTAAGGATTTAGCTTATTTACAAATGAAGTCAATAGCAGCGGCGGTGTTGCTCCGCCACCGTCTGACGGTGGCGCCCGCCCACAAGGTGGAGCAGAAAATATCATTGACATTGTTCATGAAGTACGGGCTGAAGGTGAACGTACACCGCAGGGAGCTACATGGAATTATAGAAAGTATCAAGTTGCACCACCCAAAAACGACCGCCGTTAATTGTAACGGTGGATGTAACGGAGTCAAAACGGTGGAAGCCTAA | 1629 | 47.82 | MDLGLAFAIFTAVTAYLIWFTFISRSLKGPQMWPLLGSLPGVIENCDRLHDWICDNLRACGGTYQTCIWAIPFFAKKQGLVTVTCDPRNLEHILKTRFDNYPKGPTWQAVFHELLGEGIFNSDGDTWVFQRKTAALEFTTRTLRQAMSRWVSRAIKLRFCPVLEDAELKSKTIDLQDLLLRLTFDNICGLAFGKDPQTCAPGFPENSFAMAFDRATEASLQRFIMPEVLWKFKKWLRLGMEVNLSRSLVHIEEYLSNVIDSRKLELLNQRKDSNPHDDLLSRFMKKKECYSNDFLRNVALNFILAGRDTSSVALCWFFWLITQNPIIEEKVLTEICTVLMETRGDDVASWLDEPLGFEEVDRLLYLKAALTETLRLYPSVPEDSKHVVADDVLPDGTFVPAGSSITYSIYSTGRMKSTWGEDCMEFRPERWLSPDGKKFIMHNSYKFVAFNAGPRICLGKDLAYLQMKSIAAAVLLRHRLTVAPAHKVEQKISLTLFMKYGLKVNVHRRELHGIIESIKLHHPKTTAVNCNGGCNGVKTVEA | 542 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 37095798 | 37097426 | + | evm.model.ptg000021l.1126 | HCH13g1126 | 557631 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH13g1126 | 542 | SUPERFAMILY | Cytochrome P450 | 21 | 509 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1126 | 542 | PRINTS | P450 superfamily signature | 368 | 379 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1126 | 542 | PRINTS | P450 superfamily signature | 305 | 322 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1126 | 542 | PRINTS | P450 superfamily signature | 457 | 468 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1126 | 542 | PRINTS | P450 superfamily signature | 448 | 457 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1126 | 542 | Gene3D | Cytochrome P450 | 24 | 512 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1126 | 542 | PANTHER | CYTOCHROME P450 | 19 | 502 | - | - | |
| HCH13g1126 | 542 | FunFam | Cytochrome P450 | 21 | 512 | - | - | |
| HCH13g1126 | 542 | Pfam | Cytochrome P450 | 29 | 494 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1126 | 542 | CDD | CYP86A | 67 | 502 | - | - | |
| HCH13g1126 | 542 | PRINTS | E-class P450 group I signature | 457 | 480 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1126 | 542 | PRINTS | E-class P450 group I signature | 367 | 385 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1126 | 542 | PRINTS | E-class P450 group I signature | 294 | 311 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1126 | 542 | PRINTS | E-class P450 group I signature | 314 | 340 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1126 | 542 | PRINTS | E-class P450 group I signature | 447 | 457 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1126 | 542 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 450 | 459 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH13g1126 | HCH-Chr13:37095798 | HCH3g1432 | HCH-Chr3:52232360 | 2.50E-189 | dispersed | |
| HCH4g1139 | HCH-Chr4:7470329 | HCH13g1126 | HCH-Chr13:37095798 | 2.20E-124 | transposed | |
| HCH13g1126 | HCH-Chr13:37095798 | HCH5g0522 | HCH-Chr5:3564107 | 1.50E-237 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH13g1126 | K15398 | - | csv:101221526 | 969.148 |