Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1129 ATGAACTCTGGAGAGGAAAATATTGCAGAAATCAGGGAAGCTTGTTCTTATGATTCTCAGACGGAGATTATGAAAGATGCATTTCGGAGATGGCTGCAAGAAGATGAATCAAATAGAAGCAAAACGGATTCTTTTTCTCCAAATATTCTGGAGCGGCTTTCGATTGCAAATGGCTTGTTTGATGCTGATGGAACTTGGAGCCCTTTCTATCAGCAATCATATTCAACAAGTTTTTATCCTTGCAATTCCTTGCGAGAGCAAGATGATAGTGCTGATGATATTCTTTACTGTCAAATTGAACAAGCAATGACTGATGCTGCAAATGCCAGGCGAGAGGAATTTTCGGAGGCGATACAAGCTGAGAAAGAACTCAGTGTTGCTATTCGCTGGGCTGAAGTTTCTGAAATATTATATGCTGAAGAGTTAAAACAAAGGAAAGAAACTGAAGAAGAGCTGATAAAAGAAAGAATAGAACTTAACAATGTAAAGAACCAAGTAAATGAAATGATGGAGGAACTTCAAATCGCCCACAATAAAGAATTGGCTTTGAAGAACCAGATTGCACAATCTGATTTATTGGTGAAGGAGCTGGAGCAAAAGATTTTCTCAGCCACAAAGCTGCTGCATAGTTTCGAAAATGATCGAGATGAGTTAAGGAGTCAGCGTGATGAAGCAGTCAAAAGATTGGAGAAGTTACACAATCCTCAATTTTTCACTGAGTTTTCACTCTCGGAAATTGAAGAAGCAATACAGAACTTCAATCCCTCACTTAGGATTGAAGAAGGCGGATTCGGGAGTATTTATAAAGGTCTACTACGTCACACTGAGGTGGCTATAAAAGTCTTCCATTCTCGTACCTTGCAGAGCCGGGTTGAGTTTGAACGTGGGGTTGATGTATTGAGTAAGATAAGGCATCCCAATCTTGTCACACTTATTGGAGCCTGCCCAGATGCCCTTATTCTTGTTTATGACAATGCAAGTAATGGAAATCTAGAAGATAGGCTAGTTTGCAAGGCCAATTCTTCCCCCTTATCATGGAAAACTCGAATACGCATTGCCACAGAGTTATGCTCAGCCCTGGTATTTCTACACTCCAGTAGACCATGCAGGATTATTCATGGTGATTTGAGGCCTATGAATATATTACTCGATTCCAACCATGTTTCGAAACTTGCGGAATTCGGATCTTATCATTTCTCGCCTCATGATGAAAAGTCGGGGTACAATGAGAATTTGCTTTGCAGAACCAATGCAAAGAACAATCACGACGAATACATGGATCCTGAGTTTCTTTCCTCTGGAAAACTAACAACAAAGTCAGATGTGTATTCATTTGGCATAGTATTATTAAGATTGTTGACTGGAAAACCAGACTCAAGGATAATAAATAAGGTCCAGGTTGCCATAGATAATGGGAAATTAAAAGATATAGTAGATCCGCTAGCTGGGGATTGGCCATTCATGCAGGCCGAACAATTGGCCCAGTTGGCATTGAGGTGTTGCAATAAAATTAGCAGGAACAGGCCAGACCTTGGGTCTGATGTTTGGAGGGTACTTGAGCCAATGAGGGCTTATTCTGGAGGCTCAACATTCTGCCTAGCCTCTGGGAAGCAGCAGGTTCAACCTCCTCCTTATTTCATATGTCCCATTCTTCGGGATGTTATGGAGGATCCTCATGTTGCTGCTGATGGATTTACCTATGAAAAAGCGGCATTGATAGGGTGGCTGGACAGCGGACACAGCACTTCACCGATGACAAATCTTAAGCTCGGTCATCGAAACCTCGTCCCTAACCGTGCTCTTCGTTCTGCCATTCAGGAATGGATGCAACAGCAACAGCATCAGTATATCCGTTGA 1857 41.79 MNSGEENIAEIREACSYDSQTEIMKDAFRRWLQEDESNRSKTDSFSPNILERLSIANGLFDADGTWSPFYQQSYSTSFYPCNSLREQDDSADDILYCQIEQAMTDAANARREEFSEAIQAEKELSVAIRWAEVSEILYAEELKQRKETEEELIKERIELNNVKNQVNEMMEELQIAHNKELALKNQIAQSDLLVKELEQKIFSATKLLHSFENDRDELRSQRDEAVKRLEKLHNPQFFTEFSLSEIEEAIQNFNPSLRIEEGGFGSIYKGLLRHTEVAIKVFHSRTLQSRVEFERGVDVLSKIRHPNLVTLIGACPDALILVYDNASNGNLEDRLVCKANSSPLSWKTRIRIATELCSALVFLHSSRPCRIIHGDLRPMNILLDSNHVSKLAEFGSYHFSPHDEKSGYNENLLCRTNAKNNHDEYMDPEFLSSGKLTTKSDVYSFGIVLLRLLTGKPDSRIINKVQVAIDNGKLKDIVDPLAGDWPFMQAEQLAQLALRCCNKISRNRPDLGSDVWRVLEPMRAYSGGSTFCLASGKQQVQPPPYFICPILRDVMEDPHVAADGFTYEKAALIGWLDSGHSTSPMTNLKLGHRNLVPNRALRSAIQEWMQQQQHQYIR 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37190066 37193202 - evm.model.ptg000021l.1129 HCH13g1129 557634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1129 618 Coils Coil 138 179 - -
HCH13g1129 618 PANTHER OS02G0152300 PROTEIN 58 606 IPR051348 -
HCH13g1129 618 SUPERFAMILY Protein kinase-like (PK-like) 235 511 IPR011009 -
HCH13g1129 618 SMART Ubox_2 545 608 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH13g1129 618 Gene3D Transferase(Phosphotransferase) domain 1 326 528 - -
HCH13g1129 618 ProSiteProfiles Protein kinase domain profile. 253 523 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g1129 618 ProSitePatterns Tyrosine protein kinases specific active-site signature. 371 383 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g1129 618 ProSiteProfiles U-box domain profile. 541 615 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH13g1129 618 SUPERFAMILY RING/U-box 539 615 - -
HCH13g1129 618 Gene3D Phosphorylase Kinase; domain 1 220 324 - -
HCH13g1129 618 Coils Coil 194 228 - -
HCH13g1129 618 CDD RING-Ubox_WDSUB1-like 543 598 - -
HCH13g1129 618 Pfam Protein tyrosine and serine/threonine kinase 258 511 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g1129 618 Pfam U-box domain 543 613 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH13g1129 618 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 541 617 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1129 HCH-Chr13:37190066 HCH2g1088 HCH-Chr2:53790863 1.70E-88 dispersed
HCH13g1129 HCH-Chr13:37190066 HCH13g1130 HCH-Chr13:37207829 5.10E-247 tandem
HCH11g1233 HCH-Chr11:44536117 HCH13g1129 HCH-Chr13:37190066 4.70E-115 wgd
HCH13g1129 HCH-Chr13:37190066 HCH7g1627 HCH-Chr7:48466000 2.20E-165 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81199 PF07714 PK_Tyr_Ser-Thr 7.90E-34 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1129 - - - 0.0