Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1146 ATGGATCGGAGAGATCCAATGGCGTTATCTGGATCACAAACTTTCTATATGCAGCAAAGAGGAATGACTGGCTCTGGCTCTGGAACGCAGGGCCTTCGTTCCGGGGCGAACCCGAATGTCGCTTTTCAGAACACTGGCACTGGTGGTGGTGGTAATGCTAATACATTGCCAATGGATCCTAACCCTTCTGCTGCTATTTCACCTTATGGTACCAATGTGGGTGCTCAATCTGGTGGTGTGGTTACCAGTGATCCGGTGAAGCGGAAGCGAGGCCGGCCTCGCAAGTATGGAACCGAAGGGGCTACTACTACTGTGTCTTTGGCATTGTCACCTTCTCCATCTTCTGCAAATCCAGGGACTGTAACTTCCTCTTCCCCCAAGCGGGGTAGGGGACGCCCGCCCGGGTCGGGAAAGAAGCAACAATTAGCTTCTCTTGGTGAAGGAATTTCTGGATCAGCTGGCATTGGTTTTACTCCACATGTTATCACCATTGGAGTAGGAGAAGATGTTTCTGCAAAAATTATGTCATTTTCACAACAGGGGCCAAGAGTTATATGCATCTTGTCTGCCAATGGTGCTGTCTCCACTGTAACTCTTCGCCAGCCTTCAACTTCAGGGGGCACAGTCACATATGAGGGGCGTTTTGAGATAATATGTCTGTCTGGCTCCTATTCTCTCGGAGAAACTGCTGGTTCTAGGAACCGTGCTGGTGGTCTAACTGTCTCCCTTGCCAGCCCCGATGGTCGAGTTATTGGTGGCGGAGTTGGAGGAGCGCTAATTGCAGCAACCCCGGTTCAGGTGATAGTAGGGACCTTCATGTGGGGCAGTTCAAAGACAAAGTACAAGAAGAGAGAAGCGGTGGAAGGTGTCATAGACTCGGATCATCAGACAGTTGACCATTCAGTTGCGATGACGAGCGTTCCACCTAATCAGAATCTGACTCCGACATCCTCAGTCAGCATGTGGCCAAGCTCACAGTCTCTGGACATGCGCAACGCACACATTGACATCGATTTGATGCGCGGATGA 1029 50.73 MDRRDPMALSGSQTFYMQQRGMTGSGSGTQGLRSGANPNVAFQNTGTGGGGNANTLPMDPNPSAAISPYGTNVGAQSGGVVTSDPVKRKRGRPRKYGTEGATTTVSLALSPSPSSANPGTVTSSSPKRGRGRPPGSGKKQQLASLGEGISGSAGIGFTPHVITIGVGEDVSAKIMSFSQQGPRVICILSANGAVSTVTLRQPSTSGGTVTYEGRFEIICLSGSYSLGETAGSRNRAGGLTVSLASPDGRVIGGGVGGALIAATPVQVIVGTFMWGSSKTKYKKREAVEGVIDSDHQTVDHSVAMTSVPPNQNLTPTSSVSMWPSSQSLDMRNAHIDIDLMRG 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37627919 37631369 + evm.model.ptg000021l.1146 HCH13g1146 557651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1146 342 ProSiteProfiles PPC domain profile profile. 153 294 IPR005175 -
HCH13g1146 342 MobiDBLite consensus disorder prediction 11 79 - -
HCH13g1146 342 PRINTS AT-hook-like domain signature 125 136 IPR017956 GO:0003677(InterPro)
HCH13g1146 342 PRINTS AT-hook-like domain signature 87 97 IPR017956 GO:0003677(InterPro)
HCH13g1146 342 Gene3D - 159 291 - -
HCH13g1146 342 FunFam AT-hook motif nuclear-localized protein 1-like 159 289 - -
HCH13g1146 342 Pfam Plants and Prokaryotes Conserved (PCC) domain 159 272 IPR005175 -
HCH13g1146 342 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 54 325 IPR039605 GO:0003680(InterPro)
HCH13g1146 342 MobiDBLite consensus disorder prediction 99 129 - -
HCH13g1146 342 SUPERFAMILY AF0104/ALDC/Ptd012-like 157 281 - -
HCH13g1146 342 CDD DUF296 158 272 IPR005175 -
HCH13g1146 342 SMART AT_hook_2 127 139 IPR017956 GO:0003677(InterPro)
HCH13g1146 342 SMART AT_hook_2 87 99 IPR017956 GO:0003677(InterPro)
HCH13g1146 342 MobiDBLite consensus disorder prediction 1 143 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1146 HCH-Chr13:37627919 HCH4g0865 HCH-Chr4:5539854 4.20E-57 dispersed
HCH13g1146 HCH-Chr13:37627919 HCH5g0505 HCH-Chr5:3435777 6.70E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1146 - - - 0.0