Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1155 ATGGCAATAGACCAGCCTGAGCTTACTACTGAGCAGGTTTTGACCAGGGACATTCCATGGGAGACATACATGACCACTAAACTTATCAGTGGAACAAGCCTTCAGCTGTTAAGGCGCTATGATAACAGACCGGAGAGTTACAGGGCACAATTGTTGGATGATGATGGTTCAGCATATGTTCGGGTATTTGTTAGCATTTTGCGTGATATATTTAAGGAAGAAACCGTGGAATATGTTCTAGCATTGATCGATGAAATGCTTACAGCAAACCCAAAAAGAGCAAGGTTGTTCCATGATCATTCTCTTGCAAGCGAAGATGCTTATGAACCTTTCTTAAGACTGCTATGGAAGGGAAATTGGTTCGTACAGGAGAAGAGCTGTAAAATACTTGCTTTGATAGTGAGTGCTAGAACAAAGTATCATGATGGCAGTGTTGCAAATGGCGATGCCTCAAACTCGAAGAAGAAAATCACTACCATTGATGATGTCTTGAATGGACTGGTGAAATGGCTTTGTGCACAGCTGAAGAATCCTTCTCATCCTAGTCGTGCCATACAGACATCTATCAATTGCCTTGCAACTCTACTGAAGGAACCAAAGGTCAAATCTTCCTTTGTTCAGGCCGATGGAGTGAAATTGCTTATTCCTTTTATCTCCCCTGCATCGACTCAACAATCTATCCAGCTTCTTTATGAAACATGTTTCTGTGTTTGGCTCTTATCATATTATGAACCGGCAATTGAATTCTTGGCCACTTCTAGAACCCTTCCAAGACTTGTAGAAGTTGTCAAGAGTTCCACAAAAGAGAAGGTTGTCCGAGTTGTTATTTTAACTCTGAGGAACTTACTTTTCAAGGGGACATTTGGAGCTCAAATGGTGGATCTGGGACTGCCTCAAATTGTTCAAAGTTTGAAATCACAAGCATGGAGTGATGAGGACCTTTTGGAGGCTTTGAATCAACTGGAAGAGGGGCTGAAAGATAATATCAAGAAGCTTAGTTCTTTTGATAAGTATAGGCAAGAAGTCTTTCTTGGCCATCTTGACTGGTCTCCTATGCACAAAGATCCACATTTCTGGCGTGAAAACATTACAAGCTTTGAAGAGAACGACTTCAAGATACTGAGGGTCCTAATCACCATTCTGGACACTTCCAGTGATCCAAGGACTCTGGCAGTTGGTTGCTTTGATCTCTCCCAATTCATCCAATACCATCCAGCTGGGAGAATTATAGTGACAGACCTCAAGGCAAAGGAAAGAGTGATGAAATTGATGAATCATGAGAATGCTGAGGTTACCAAAAATGCCCTTCTGTGCATTCAAAGGCTCTTCCTAGGTGCTAAATATGCTAGCTTTCTGCAGGCTTGA 1365 41.9 MAIDQPELTTEQVLTRDIPWETYMTTKLISGTSLQLLRRYDNRPESYRAQLLDDDGSAYVRVFVSILRDIFKEETVEYVLALIDEMLTANPKRARLFHDHSLASEDAYEPFLRLLWKGNWFVQEKSCKILALIVSARTKYHDGSVANGDASNSKKKITTIDDVLNGLVKWLCAQLKNPSHPSRAIQTSINCLATLLKEPKVKSSFVQADGVKLLIPFISPASTQQSIQLLYETCFCVWLLSYYEPAIEFLATSRTLPRLVEVVKSSTKEKVVRVVILTLRNLLFKGTFGAQMVDLGLPQIVQSLKSQAWSDEDLLEALNQLEEGLKDNIKKLSSFDKYRQEVFLGHLDWSPMHKDPHFWRENITSFEENDFKILRVLITILDTSSDPRTLAVGCFDLSQFIQYHPAGRIIVTDLKAKERVMKLMNHENAEVTKNALLCIQRLFLGAKYASFLQA 454
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 37946073 37953685 + evm.model.ptg000021l.1155 HCH13g1155 557660

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1155 454 Pfam V-ATPase subunit H 9 325 IPR004908 GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
HCH13g1155 454 SUPERFAMILY ARM repeat 10 444 IPR016024 -
HCH13g1155 454 Gene3D - 7 333 IPR011989 -
HCH13g1155 454 Pfam V-ATPase subunit H 331 443 IPR011987 GO:0000221(InterPro)|GO:1902600(InterPro)
HCH13g1155 454 PIRSF V-ATP_synth_H 3 453 IPR004908 GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
HCH13g1155 454 Gene3D - 346 446 IPR038497 -
HCH13g1155 454 FunFam V-type proton ATPase subunit H 345 446 - -
HCH13g1155 454 CDD VATPase_H 4 448 - -
HCH13g1155 454 SMART arm_5 404 444 IPR000225 GO:0005515(InterPro)
HCH13g1155 454 SMART arm_5 198 242 IPR000225 GO:0005515(InterPro)
HCH13g1155 454 SMART arm_5 243 284 IPR000225 GO:0005515(InterPro)
HCH13g1155 454 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 2 453 IPR004908 GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1155 K02144 - - csv:101217015 823.542
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH4g0577 . 1 1001 Primary Pumps ATPases(2) AT1G10130 83.1 0.0e+00 1632.1
HCH2g1144 . 1 812 Primary Pumps ATPases(2) AT2G28520 80.7 0.0e+00 1333.9
HCH7g0534 . 12 815 Primary Pumps ATPases(2) AT2G28520 63.3 6.9e-300 1026.5
HCH4g0766 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.1 1.3e-298 1022.3
HCH7g0534 . 6 820 Primary Pumps ATPases(2) AT2G21410 77.5 0.0e+00 1271.1
HCH4g0766 . 1 808 Primary Pumps ATPases(2) AT2G21410 74.3 0.0e+00 1218.4
HCH2g1144 . 9 818 Primary Pumps ATPases(2) AT2G21410 61.9 2.1e-296 1015.0
HCH7g0534 . 1 820 Primary Pumps ATPases(2) AT4G39080 78.2 0.0e+00 1276.9
HCH4g0766 . 1 808 Primary Pumps ATPases(2) AT4G39080 74.9 0.0e+00 1212.6
HCH2g1144 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.2 3.6e-296 1014.2
HCH4g0772 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.3e-60 229.2
HCH4g0773 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.3e-60 229.2
HCH4g0774 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.3e-60 229.2
HCH12g0811 . 28 165 Primary Pumps ATPases(2) AT4G34720 94.9 1.2e-58 222.6
HCH4g0774 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 7.7e-67 250.4
HCH4g0772 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 2.9e-66 248.4
HCH4g0773 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 2.9e-66 248.4
HCH12g0811 . 2 165 Primary Pumps ATPases(2) AT1G75630 77.3 1.2e-64 243.0
HCH4g0772 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 9.1e-74 273.1
HCH4g0773 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 9.1e-74 273.1
HCH4g0774 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 1.2e-73 272.7
HCH12g0811 . 3 165 Primary Pumps ATPases(2) AT2G16510 94.5 1.9e-71 265.4
HCH4g0772 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 2.5e-52 201.4
HCH4g0773 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 2.5e-52 201.4
HCH4g0774 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 3.3e-52 201.1
HCH12g0811 . 1 122 Primary Pumps ATPases(2) AT1G19910 93.4 1.4e-50 195.7
HCH4g0410 . 9 180 Primary Pumps ATPases(2) AT2G25610 84.3 3.8e-70 261.5
HCH12g0344 . 10 148 Primary Pumps ATPases(2) AT2G25610 58.5 3.4e-39 158.7
HCH4g0772 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.7e-60 227.6
HCH4g0773 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.7e-60 227.6
HCH4g0774 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.7e-60 227.6
HCH12g0811 . 28 165 Primary Pumps ATPases(2) AT4G38920 94.9 3.4e-58 221.1
HCH4g0410 . 1 180 Primary Pumps ATPases(2) AT4G32530 76.2 7.3e-76 280.4
HCH12g0344 . 1 148 Primary Pumps ATPases(2) AT4G32530 52.4 1.7e-40 162.9
HCH3g1300 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.9 0.0e+00 1684.5
HCH10g0972 . 9 1049 Primary Pumps ATPases(2) AT1G07810 65.0 0.0e+00 1302.3
HCH3g1300 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.7 0.0e+00 1683.7
HCH10g0972 . 9 1039 Primary Pumps ATPases(2) AT1G07670 65.7 0.0e+00 1304.3
HCH4g0577 . 1 1001 Primary Pumps ATPases(2) AT1G10130 83.1 0.0e+00 1632.1
HCH10g0972 . 2 1048 Primary Pumps ATPases(2) AT4G00900 77.6 0.0e+00 1608.6
HCH3g1300 . 22 1061 Primary Pumps ATPases(2) AT4G00900 65.5 0.0e+00 1318.5
HCH5g0059 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 7.1e-58 219.9
HCH5g0791 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 7.1e-58 219.9
HCH7g0450 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.5 1.7e-269 924.9
HCH2g0574 . 1 485 Primary Pumps ATPases(2) AT1G76030 96.1 9.3e-268 919.1
HCH10g1051 . 1 88 Primary Pumps ATPases(2) AT1G76030 90.9 4.8e-38 156.0
HCH10g1103 . 1 375 Primary Pumps ATPases(2) AT1G12840 81.3 1.8e-178 622.1
HCH7g0068 . 1 260 Primary Pumps ATPases(2) AT3G58730 82.0 6.8e-116 413.7
HCH13g1155 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.0 2.9e-207 718.0
HCH4g0772 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 9.1e-74 273.1
HCH4g0773 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 9.1e-74 273.1
HCH4g0774 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 1.2e-73 272.7
HCH12g0811 . 3 165 Primary Pumps ATPases(2) AT2G16510 94.5 1.9e-71 265.4
HCH7g0450 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 7.0e-271 929.5
HCH2g0574 . 1 488 Primary Pumps ATPases(2) AT4G38510 96.1 3.5e-270 927.2
HCH10g1051 . 1 88 Primary Pumps ATPases(2) AT4G38510 92.0 7.5e-39 158.7
HCH4g1835 . 1 183 Primary Pumps ATPases(2) AT1G64200 76.8 6.4e-71 263.8
HCH1g0343 . 1 183 Primary Pumps ATPases(2) AT1G64200 76.8 1.1e-70 263.1
HCH4g1852 . 1 183 Primary Pumps ATPases(2) AT1G64200 75.3 7.9e-69 256.9
HCH1g0194 . 1 127 Primary Pumps ATPases(2) AT1G64200 62.1 4.1e-41 164.9
HCH2g0574 . 12 485 Primary Pumps ATPases(2) AT1G20260 97.5 9.3e-268 919.1
HCH7g0450 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 7.9e-267 916.0
HCH2g1144 . 1 812 Primary Pumps ATPases(2) AT2G28520 80.7 0.0e+00 1333.9
HCH7g0534 . 12 815 Primary Pumps ATPases(2) AT2G28520 63.3 6.9e-300 1026.5
HCH4g0766 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.1 1.3e-298 1022.3
HCH9g0213 . 1 351 Primary Pumps ATPases(2) AT3G28715 91.5 6.5e-191 663.3
HCH1g0343 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.8 4.6e-92 334.3
HCH4g1835 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.4 1.0e-91 333.2
HCH4g1852 . 1 219 Primary Pumps ATPases(2) AT4G11150 76.8 5.0e-86 314.3
HCH1g0194 . 1 144 Primary Pumps ATPases(2) AT4G11150 51.5 2.0e-42 169.5
HCH9g0940 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.4 0.0e+00 1171.0
HCH7g0450 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.5 1.7e-269 924.9
HCH2g0574 . 1 485 Primary Pumps ATPases(2) AT1G76030 96.1 9.3e-268 919.1
HCH10g1051 . 1 88 Primary Pumps ATPases(2) AT1G76030 90.9 4.8e-38 156.0
HCH7g0450 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 7.0e-271 929.5
HCH2g0574 . 1 488 Primary Pumps ATPases(2) AT4G38510 96.1 3.5e-270 927.2
HCH10g1051 . 1 88 Primary Pumps ATPases(2) AT4G38510 92.0 7.5e-39 158.7
HCH2g0574 . 12 485 Primary Pumps ATPases(2) AT1G20260 97.5 9.3e-268 919.1
HCH7g0450 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 7.9e-267 916.0
HCH10g1103 . 1 375 Primary Pumps ATPases(2) AT1G12840 81.3 1.8e-178 622.1
HCH7g0068 . 1 260 Primary Pumps ATPases(2) AT3G58730 82.0 6.8e-116 413.7
HCH1g0343 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.8 4.6e-92 334.3
HCH4g1835 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.4 1.0e-91 333.2
HCH4g1852 . 1 219 Primary Pumps ATPases(2) AT4G11150 76.8 5.0e-86 314.3
HCH1g0194 . 1 144 Primary Pumps ATPases(2) AT4G11150 51.5 2.0e-42 169.5
HCH1g0343 . 1 225 Primary Pumps ATPases(2) AT3G08560 69.7 4.3e-77 284.6
HCH4g1835 . 1 223 Primary Pumps ATPases(2) AT3G08560 70.3 5.6e-77 284.3
HCH4g1852 . 1 219 Primary Pumps ATPases(2) AT3G08560 68.4 4.9e-73 271.2
HCH4g1835 . 1 183 Primary Pumps ATPases(2) AT1G64200 76.8 6.4e-71 263.8
HCH1g0343 . 1 183 Primary Pumps ATPases(2) AT1G64200 76.8 1.1e-70 263.1
HCH4g1852 . 1 183 Primary Pumps ATPases(2) AT1G64200 75.3 7.9e-69 256.9
HCH1g0194 . 1 127 Primary Pumps ATPases(2) AT1G64200 62.1 4.1e-41 164.9
HCH5g0059 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 7.1e-58 219.9
HCH5g0791 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 7.1e-58 219.9
HCH13g1155 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.0 2.9e-207 718.0
HCH2g1144 . 1 812 Primary Pumps ATPases(2) AT2G28520 80.7 0.0e+00 1333.9
HCH7g0534 . 12 815 Primary Pumps ATPases(2) AT2G28520 63.3 6.9e-300 1026.5
HCH4g0766 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.1 1.3e-298 1022.3
HCH7g0534 . 6 820 Primary Pumps ATPases(2) AT2G21410 77.5 0.0e+00 1271.1
HCH4g0766 . 1 808 Primary Pumps ATPases(2) AT2G21410 74.3 0.0e+00 1218.4
HCH2g1144 . 9 818 Primary Pumps ATPases(2) AT2G21410 61.9 2.1e-296 1015.0
HCH7g0534 . 1 820 Primary Pumps ATPases(2) AT4G39080 78.2 0.0e+00 1276.9
HCH4g0766 . 1 808 Primary Pumps ATPases(2) AT4G39080 74.9 0.0e+00 1212.6
HCH2g1144 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.2 3.6e-296 1014.2
HCH4g0772 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.3e-60 229.2
HCH4g0773 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.3e-60 229.2
HCH4g0774 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.3e-60 229.2
HCH12g0811 . 28 165 Primary Pumps ATPases(2) AT4G34720 94.9 1.2e-58 222.6
HCH4g0772 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 2.5e-52 201.4
HCH4g0773 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 2.5e-52 201.4
HCH4g0774 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 3.3e-52 201.1
HCH12g0811 . 1 122 Primary Pumps ATPases(2) AT1G19910 93.4 1.4e-50 195.7
HCH4g0772 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.7e-60 227.6
HCH4g0773 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.7e-60 227.6
HCH4g0774 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.7e-60 227.6
HCH12g0811 . 28 165 Primary Pumps ATPases(2) AT4G38920 94.9 3.4e-58 221.1
HCH4g0774 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 7.7e-67 250.4
HCH4g0772 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 2.9e-66 248.4
HCH4g0773 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 2.9e-66 248.4
HCH12g0811 . 2 165 Primary Pumps ATPases(2) AT1G75630 77.3 1.2e-64 243.0
HCH4g0772 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 9.1e-74 273.1
HCH4g0773 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 9.1e-74 273.1
HCH4g0774 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 1.2e-73 272.7
HCH12g0811 . 3 165 Primary Pumps ATPases(2) AT2G16510 94.5 1.9e-71 265.4
HCH4g0410 . 1 180 Primary Pumps ATPases(2) AT4G32530 76.2 7.3e-76 280.4
HCH12g0344 . 1 148 Primary Pumps ATPases(2) AT4G32530 52.4 1.7e-40 162.9
HCH4g0410 . 9 180 Primary Pumps ATPases(2) AT2G25610 84.3 3.8e-70 261.5
HCH12g0344 . 10 148 Primary Pumps ATPases(2) AT2G25610 58.5 3.4e-39 158.7
HCH9g0213 . 1 351 Primary Pumps ATPases(2) AT3G28710 94.0 3.9e-199 690.6
HCH9g0213 . 1 351 Primary Pumps ATPases(2) AT3G28715 91.5 6.5e-191 663.3
HCH3g1300 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.9 0.0e+00 1684.5
HCH10g0972 . 9 1049 Primary Pumps ATPases(2) AT1G07810 65.0 0.0e+00 1302.3
HCH10g0972 . 2 1048 Primary Pumps ATPases(2) AT4G00900 77.6 0.0e+00 1608.6
HCH3g1300 . 22 1061 Primary Pumps ATPases(2) AT4G00900 65.5 0.0e+00 1318.5
HCH4g0577 . 1 1001 Primary Pumps ATPases(2) AT1G10130 83.1 0.0e+00 1632.1
HCH3g1300 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.7 0.0e+00 1683.7
HCH10g0972 . 9 1039 Primary Pumps ATPases(2) AT1G07670 65.7 0.0e+00 1304.3
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003959 2 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 3 3 1 43