Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1155 ATGGCAATAGACCAGCCTGAGCTTACTACTGAGCAGGTTTTGACCAGGGACATTCCATGGGAGACATACATGACCACTAAACTTATCAGTGGAACAAGCCTTCAGCTGTTAAGGCGCTATGATAACAGACCGGAGAGTTACAGGGCACAATTGTTGGATGATGATGGTTCAGCATATGTTCGGGTATTTGTTAGCATTTTGCGTGATATATTTAAGGAAGAAACCGTGGAATATGTTCTAGCATTGATCGATGAAATGCTTACAGCAAACCCAAAAAGAGCAAGGTTGTTCCATGATCATTCTCTTGCAAGCGAAGATGCTTATGAACCTTTCTTAAGACTGCTATGGAAGGGAAATTGGTTCGTACAGGAGAAGAGCTGTAAAATACTTGCTTTGATAGTGAGTGCTAGAACAAAGTATCATGATGGCAGTGTTGCAAATGGCGATGCCTCAAACTCGAAGAAGAAAATCACTACCATTGATGATGTCTTGAATGGACTGGTGAAATGGCTTTGTGCACAGCTGAAGAATCCTTCTCATCCTAGTCGTGCCATACAGACATCTATCAATTGCCTTGCAACTCTACTGAAGGAACCAAAGGTCAAATCTTCCTTTGTTCAGGCCGATGGAGTGAAATTGCTTATTCCTTTTATCTCCCCTGCATCGACTCAACAATCTATCCAGCTTCTTTATGAAACATGTTTCTGTGTTTGGCTCTTATCATATTATGAACCGGCAATTGAATTCTTGGCCACTTCTAGAACCCTTCCAAGACTTGTAGAAGTTGTCAAGAGTTCCACAAAAGAGAAGGTTGTCCGAGTTGTTATTTTAACTCTGAGGAACTTACTTTTCAAGGGGACATTTGGAGCTCAAATGGTGGATCTGGGACTGCCTCAAATTGTTCAAAGTTTGAAATCACAAGCATGGAGTGATGAGGACCTTTTGGAGGCTTTGAATCAACTGGAAGAGGGGCTGAAAGATAATATCAAGAAGCTTAGTTCTTTTGATAAGTATAGGCAAGAAGTCTTTCTTGGCCATCTTGACTGGTCTCCTATGCACAAAGATCCACATTTCTGGCGTGAAAACATTACAAGCTTTGAAGAGAACGACTTCAAGATACTGAGGGTCCTAATCACCATTCTGGACACTTCCAGTGATCCAAGGACTCTGGCAGTTGGTTGCTTTGATCTCTCCCAATTCATCCAATACCATCCAGCTGGGAGAATTATAGTGACAGACCTCAAGGCAAAGGAAAGAGTGATGAAATTGATGAATCATGAGAATGCTGAGGTTACCAAAAATGCCCTTCTGTGCATTCAAAGGCTCTTCCTAGGTGCTAAATATGCTAGCTTTCTGCAGGCTTGA 1365 41.9 MAIDQPELTTEQVLTRDIPWETYMTTKLISGTSLQLLRRYDNRPESYRAQLLDDDGSAYVRVFVSILRDIFKEETVEYVLALIDEMLTANPKRARLFHDHSLASEDAYEPFLRLLWKGNWFVQEKSCKILALIVSARTKYHDGSVANGDASNSKKKITTIDDVLNGLVKWLCAQLKNPSHPSRAIQTSINCLATLLKEPKVKSSFVQADGVKLLIPFISPASTQQSIQLLYETCFCVWLLSYYEPAIEFLATSRTLPRLVEVVKSSTKEKVVRVVILTLRNLLFKGTFGAQMVDLGLPQIVQSLKSQAWSDEDLLEALNQLEEGLKDNIKKLSSFDKYRQEVFLGHLDWSPMHKDPHFWRENITSFEENDFKILRVLITILDTSSDPRTLAVGCFDLSQFIQYHPAGRIIVTDLKAKERVMKLMNHENAEVTKNALLCIQRLFLGAKYASFLQA 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37946073 37953685 + evm.model.ptg000021l.1155 HCH13g1155 557660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1155 454 Pfam V-ATPase subunit H 9 325 IPR004908 GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
HCH13g1155 454 SUPERFAMILY ARM repeat 10 444 IPR016024 -
HCH13g1155 454 Gene3D - 7 333 IPR011989 -
HCH13g1155 454 Pfam V-ATPase subunit H 331 443 IPR011987 GO:0000221(InterPro)|GO:1902600(InterPro)
HCH13g1155 454 PIRSF V-ATP_synth_H 3 453 IPR004908 GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
HCH13g1155 454 Gene3D - 346 446 IPR038497 -
HCH13g1155 454 FunFam V-type proton ATPase subunit H 345 446 - -
HCH13g1155 454 CDD VATPase_H 4 448 - -
HCH13g1155 454 SMART arm_5 404 444 IPR000225 GO:0005515(InterPro)
HCH13g1155 454 SMART arm_5 198 242 IPR000225 GO:0005515(InterPro)
HCH13g1155 454 SMART arm_5 243 284 IPR000225 GO:0005515(InterPro)
HCH13g1155 454 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 2 453 IPR004908 GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1155 K02144 - csv:101217015 823.542