Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1161 ATGAGTTTTGGTGGTTTCCTCGACGGCGGCGGCGGTGGCGCAAGAATCGTTGCCGATTTACCTTACACCAAAACTATGTTTAACTCCCCGGGACTCTCTCTCGCTCTTGCGAATATGGATGGACAAGGAGATATAAATAGTAGTAATAGAATGCCAGAAAGTTTTGAACATAATGTTGGAAGAAGAAGCAGAGAAGAAGAACATGAAAGTAGATCTGGCAGTGATAATATGGACGGTGGCTCCGGTGATGAACAAGACGCCGCCGACAACCCTCCGAGGAAAAAACGTTATCACCGACACACTCCTCAGCAAATCCAAGAGCTTGAATCTGTTTTTAAAGAGTGTCCTCATCCTGATGAGAAGCAAAGGCTGGAACTCAGTAGAAGGCTTTGTTTGGAAACTAGACAAGTTAAGTTTTGGTTTCAAAATCGCCGTACTCAAATGAAGACTCAATTGGAACGCCACGAGAATACTTTGCTTAGACAGGAGAACGATAAGCTACGAGCGGAGAATATGTCGATTCGAGATGCGATGAGAAATCCTATGTGTACTAACTGTGGTGGTCCAGCTATTATAGGTGATATCTCACTTGAAGAACAGCAATTAAGGATTGAAAATGCTCGGTTGAAGGATGAACTAGACCGTGTTTGCGCTCTTGCTGGGAAGTTTTTGGGCCGGCCGATTTCGTCGTTGGCTAATTCCATTGCACCTCCGTTGCCAAGTTCAAGTCTTGAACTGGGAGTTGGGAATCATGGGTTTGGGGGTTTGAGTATGGCAACTTCAATGCCTATGGGAGGGCCTGATTTCGGAGGTGGGTTATCGGGTAGTTTAGCTGTTGTTCCGCAGCCTACTAGACCATTGGTGGGGGGTATGGGACTTGATCGATCTGTCGAGAGATCTATGCTGTTGGAGCTAGCTTTGGCTGCTATGGATGAATTGGTTAAAATGGCACAAACAGATGAGCCACTTTGGATAGGGAATTTGGAAGGTGGAAGAGAAATATTGAATCATGATGAGTATATGAGAACATTCACTCCTTGCATAGGCATGAAACCCAATGGCTTTGTTAGTGAGGCATCAAGAGAGACTGGTATGGTCATTATCAATAGCTTGGCTCTTGTGGAAACTTTAATAGACTCAAATCGATGGGCGGAGATGTTTCCTTGTATGATTGCCAGAACTACAACAACTGATGTGATTTCTAGTGGTATGGGTGGAACAAGAAATGGTGCATTGCAACTGATGCATGCTGAGCTTCAAGTATTATCGCCGTTGGTCCCGGTCCGGGAAGTTAACTTCCTGCGCTTCTGTAAACAGCATGCTGAAGGGGTTTGGGCTGTTGTTGATGTATCAATTGATGCCTTGAGAGAGACTCCTGGTGGAGCTTCACCATTCACTAACTGCAGAAGGCTTCCTTCTGGTTGTGTTGTTCAAGATATGCCTAATGGTTATTCCAAGGTTACGTGGGTTGAACATGCGGAATATGAAGAAAGTCAAATACACCAACTCTACCGCCCCCTTCTCAACTCTGGTATGGGCTTTGGAGCCCAGCGATGGGTTGCAACTCTTCAACGTCAATGTGAATGCCTCGCTATCCTCATGTCTTCTGCTGTGCCTGTTAGAGATCACACAACAACAATTACTGCTGGTGGTCGGCGGAGCATGTTGAAGCTAGCCCAGCGCATGACAGCAAACTTCTGCGCCGGGGTGTGCGCGTCCACTGTGCACAAATGGAACAAGCTCAATGCGGGTAGTGTTGATGAGGATGTTCGTGTCATGACTCGGAAGAGTGTCGATGATCCCGGTGAGCCACCAGGTATTGTGTTGAGTGCTGCGACATCTGTATGGCTTCCGGTATCCCCTCAAAAACTGTTTGACTTCCTACGTGATGAACGGCTCAGAAGCGAATGGGACATACTTTCCAACGGTGGCCCCATGCAGGAAATGGCCCACATTGCCAAAGGCCAAGATCATGGCAATTGTGTCTCCCTTCTACGAGCCAGCGCTATAAATGCTAACCAAAGCAGCATGCTGATTTTACAAGAGACATGCATAGACGCAGCCGGTTCGCTTGTCGTGTATGCCCCGGTCGACATTCCCGCAATGCACGTCGTAATGAACGGTGGAGACTCTGCCTACGTTGCACTATTACCGTCCGGCTTCGCCATCGTTCCGGACGGGCCAAGCACGCGGGGGTTGACGACTGGGATGAATGGGAGTAGTCCAAGCCGTGGTGGAGATGGGACTCAACGGGTAAGTGGGTCCCTTCTAACCGTTGCCTTTCAAATTCTCGTGAATAGCCTACCTACGGCCAAGCTCACGGTAGAATCGGTGGAAACGGTCAACAATCTCATCTCCTGCACCGTCCAAAAGATCAAGGCCGCTCTTCAATGTGAAAGCTGA 2403 48.02 MSFGGFLDGGGGGARIVADLPYTKTMFNSPGLSLALANMDGQGDINSSNRMPESFEHNVGRRSREEEHESRSGSDNMDGGSGDEQDAADNPPRKKRYHRHTPQQIQELESVFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPMCTNCGGPAIIGDISLEEQQLRIENARLKDELDRVCALAGKFLGRPISSLANSIAPPLPSSSLELGVGNHGFGGLSMATSMPMGGPDFGGGLSGSLAVVPQPTRPLVGGMGLDRSVERSMLLELALAAMDELVKMAQTDEPLWIGNLEGGREILNHDEYMRTFTPCIGMKPNGFVSEASRETGMVIINSLALVETLIDSNRWAEMFPCMIARTTTTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDALRETPGGASPFTNCRRLPSGCVVQDMPNGYSKVTWVEHAEYEESQIHQLYRPLLNSGMGFGAQRWVATLQRQCECLAILMSSAVPVRDHTTTITAGGRRSMLKLAQRMTANFCAGVCASTVHKWNKLNAGSVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQKLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPSTRGLTTGMNGSSPSRGGDGTQRVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 800
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38075598 38080527 - evm.model.ptg000021l.1161 HCH13g1161 557666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1161 800 FunFam Homeobox-leucine zipper protein GLABRA 2 304 528 - -
HCH13g1161 800 Pfam START domain 304 529 IPR002913 GO:0008289(InterPro)
HCH13g1161 800 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 72 799 IPR042160 -
HCH13g1161 800 ProSiteProfiles START domain profile. 295 532 IPR002913 GO:0008289(InterPro)
HCH13g1161 800 MobiDBLite consensus disorder prediction 43 101 - -
HCH13g1161 800 CDD homeodomain 93 151 IPR001356 GO:0003677(InterPro)
HCH13g1161 800 FunFam Homeobox-leucine zipper protein HDG1 81 167 - -
HCH13g1161 800 Coils Coil 145 177 - -
HCH13g1161 800 Gene3D - 81 167 - -
HCH13g1161 800 SMART START_1 304 529 IPR002913 GO:0008289(InterPro)
HCH13g1161 800 Pfam Homeodomain 94 149 IPR001356 GO:0003677(InterPro)
HCH13g1161 800 SUPERFAMILY Bet v1-like 297 529 - -
HCH13g1161 800 CDD START_ArGLABRA2_like 299 528 - -
HCH13g1161 800 ProSiteProfiles 'Homeobox' domain profile. 91 151 IPR001356 GO:0003677(InterPro)
HCH13g1161 800 MobiDBLite consensus disorder prediction 55 74 - -
HCH13g1161 800 SMART HOX_1 92 155 IPR001356 GO:0003677(InterPro)
HCH13g1161 800 SUPERFAMILY Bet v1-like 558 793 - -
HCH13g1161 800 SUPERFAMILY Homeodomain-like 77 151 IPR009057 -
HCH13g1161 800 ProSitePatterns 'Homeobox' domain signature. 126 149 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1161 HCH-Chr13:38075598 HCH2g0744 HCH-Chr2:51109525 5.50E-225 dispersed
HCH11g1204 HCH-Chr11:44340270 HCH13g1161 HCH-Chr13:38075598 8.20E-258 wgd
HCH13g1161 HCH-Chr13:38075598 HCH7g1594 HCH-Chr7:48243759 3.10E-305 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32852 PF01852 START 3.10E-56 CL0209 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1161 K09338 - csv:101222248 1395.18