Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1174 ATGAAGAATAATGATGTTCAAAAACAAGAACGAGAGGAAGAAGAAGATCTCAGAATCAACGACTCTGATGATCCCTCTAACTCTAATCACAGACATCATCTTTCACTCGCTCTAAAAGAAGAATTTCTCGTCCCCGACCCCGAACCCGAACCCAACACTAAACTTCCATCTCCAAACAATACAACCAAACCCAACTCTCTCCCACTCCCACCCAAAAGATCTTCCACGAAAGATCGCCACACAAAAGTCGAAGGCCGTGGCCGAAGAATCCGAATCCCCGCCACTTGCGCCGCACGTATCTTCCAATTAACACGAGAGCTCGGCCATAAATCCGACGGCGAAACCATCCGTTGGCTTCTCGAACGTGCCGAGCACGCTATCATCGCCGCCACCGGCACCGGCACCGTCCCGGCCATCGCCATGTCCGTTAACGGAACACTCAAAATTCCAACGTCCACCATTCCCGCCACCACCAGTGCCAACAACACCACTCCCTCTTCCGACCAAGACGTCGGTAAGAAAAGACGTAAACGCCCCGCCAACAGCGAATACGTTGATCTAAACGACGACGACGGTTCCGTTTCCGTTCAGCAAACCGGTTTTCCACAAGGGTTAGTTCCAGTGTGGGCGATCCCATCAAACGCTATTATTCCGGGAGCTGTTTTCATGCTTCCTTCTTCTGCTCCTCCTTCAAGCCTTCAATATCCTCAGCTTTTCTCATTCCCTGCCACGCCAGCCAGACCTATTTCTTCTGTTTTTCTATCGAAGCCCATGATTTCAACATCATCATCCCACGCTCAATCTACCTCAGCTTTTGCTAATTCTTCTACTTCCATATCTCAATCAGTCATGGCGCCTATTTCATCTTCTACCATTCCCACGAGTAGCAGCAGTAATAATAATAATAATAATATCAAAGCTCAGGTGCTTCGGGATTTTTCGTTGGAGATTTATGATAAAGAAGAGCTTCAATTCATGTCTCGCTCTTCCCCTCAGTGA 999 48.25 MKNNDVQKQEREEEEDLRINDSDDPSNSNHRHHLSLALKEEFLVPDPEPEPNTKLPSPNNTTKPNSLPLPPKRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEHAIIAATGTGTVPAIAMSVNGTLKIPTSTIPATTSANNTTPSSDQDVGKKRRKRPANSEYVDLNDDDGSVSVQQTGFPQGLVPVWAIPSNAIIPGAVFMLPSSAPPSSLQYPQLFSFPATPARPISSVFLSKPMISTSSSHAQSTSAFANSSTSISQSVMAPISSSTIPTSSSSNNNNNNIKAQVLRDFSLEIYDKEELQFMSRSSPQ 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38340984 38341982 + evm.model.ptg000021l.1174 HCH13g1174 557679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1174 332 MobiDBLite consensus disorder prediction 73 89 - -
HCH13g1174 332 MobiDBLite consensus disorder prediction 152 193 - -
HCH13g1174 332 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 57 295 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
HCH13g1174 332 MobiDBLite consensus disorder prediction 1 90 - -
HCH13g1174 332 MobiDBLite consensus disorder prediction 152 168 - -
HCH13g1174 332 Pfam TCP family transcription factor 75 171 IPR017887 -
HCH13g1174 332 ProSiteProfiles TCP domain profile. 76 130 IPR017887 -
HCH13g1174 332 MobiDBLite consensus disorder prediction 169 185 - -
HCH13g1174 332 MobiDBLite consensus disorder prediction 55 72 - -
HCH13g1174 332 MobiDBLite consensus disorder prediction 1 47 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1174 HCH-Chr13:38340984 HCH9g0048 HCH-Chr9:277479 2.30E-28 dispersed
HCH11g1182 HCH-Chr11:44152374 HCH13g1174 HCH-Chr13:38340984 2.20E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32854 PF03634 TCP 3.70E-29 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1174 - - - 0.0