Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH13g1174 | ATGAAGAATAATGATGTTCAAAAACAAGAACGAGAGGAAGAAGAAGATCTCAGAATCAACGACTCTGATGATCCCTCTAACTCTAATCACAGACATCATCTTTCACTCGCTCTAAAAGAAGAATTTCTCGTCCCCGACCCCGAACCCGAACCCAACACTAAACTTCCATCTCCAAACAATACAACCAAACCCAACTCTCTCCCACTCCCACCCAAAAGATCTTCCACGAAAGATCGCCACACAAAAGTCGAAGGCCGTGGCCGAAGAATCCGAATCCCCGCCACTTGCGCCGCACGTATCTTCCAATTAACACGAGAGCTCGGCCATAAATCCGACGGCGAAACCATCCGTTGGCTTCTCGAACGTGCCGAGCACGCTATCATCGCCGCCACCGGCACCGGCACCGTCCCGGCCATCGCCATGTCCGTTAACGGAACACTCAAAATTCCAACGTCCACCATTCCCGCCACCACCAGTGCCAACAACACCACTCCCTCTTCCGACCAAGACGTCGGTAAGAAAAGACGTAAACGCCCCGCCAACAGCGAATACGTTGATCTAAACGACGACGACGGTTCCGTTTCCGTTCAGCAAACCGGTTTTCCACAAGGGTTAGTTCCAGTGTGGGCGATCCCATCAAACGCTATTATTCCGGGAGCTGTTTTCATGCTTCCTTCTTCTGCTCCTCCTTCAAGCCTTCAATATCCTCAGCTTTTCTCATTCCCTGCCACGCCAGCCAGACCTATTTCTTCTGTTTTTCTATCGAAGCCCATGATTTCAACATCATCATCCCACGCTCAATCTACCTCAGCTTTTGCTAATTCTTCTACTTCCATATCTCAATCAGTCATGGCGCCTATTTCATCTTCTACCATTCCCACGAGTAGCAGCAGTAATAATAATAATAATAATATCAAAGCTCAGGTGCTTCGGGATTTTTCGTTGGAGATTTATGATAAAGAAGAGCTTCAATTCATGTCTCGCTCTTCCCCTCAGTGA | 999 | 48.25 | MKNNDVQKQEREEEEDLRINDSDDPSNSNHRHHLSLALKEEFLVPDPEPEPNTKLPSPNNTTKPNSLPLPPKRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEHAIIAATGTGTVPAIAMSVNGTLKIPTSTIPATTSANNTTPSSDQDVGKKRRKRPANSEYVDLNDDDGSVSVQQTGFPQGLVPVWAIPSNAIIPGAVFMLPSSAPPSSLQYPQLFSFPATPARPISSVFLSKPMISTSSSHAQSTSAFANSSTSISQSVMAPISSSTIPTSSSSNNNNNNIKAQVLRDFSLEIYDKEELQFMSRSSPQ | 332 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 38340984 | 38341982 | + | evm.model.ptg000021l.1174 | HCH13g1174 | 557679 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH13g1174 | 332 | MobiDBLite | consensus disorder prediction | 73 | 89 | - | - | |
HCH13g1174 | 332 | MobiDBLite | consensus disorder prediction | 152 | 193 | - | - | |
HCH13g1174 | 332 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 57 | 295 | IPR005333 | GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
HCH13g1174 | 332 | MobiDBLite | consensus disorder prediction | 1 | 90 | - | - | |
HCH13g1174 | 332 | MobiDBLite | consensus disorder prediction | 152 | 168 | - | - | |
HCH13g1174 | 332 | Pfam | TCP family transcription factor | 75 | 171 | IPR017887 | - | |
HCH13g1174 | 332 | ProSiteProfiles | TCP domain profile. | 76 | 130 | IPR017887 | - | |
HCH13g1174 | 332 | MobiDBLite | consensus disorder prediction | 169 | 185 | - | - | |
HCH13g1174 | 332 | MobiDBLite | consensus disorder prediction | 55 | 72 | - | - | |
HCH13g1174 | 332 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH13g1174 | HCH-Chr13:38340984 | HCH9g0048 | HCH-Chr9:277479 | 2.30E-28 | dispersed | |
HCH11g1182 | HCH-Chr11:44152374 | HCH13g1174 | HCH-Chr13:38340984 | 2.20E-44 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32854 | PF03634 | TCP | 3.70E-29 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH13g1174 | - | - | - | 0.0 |