Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1174 ATGAAGAATAATGATGTTCAAAAACAAGAACGAGAGGAAGAAGAAGATCTCAGAATCAACGACTCTGATGATCCCTCTAACTCTAATCACAGACATCATCTTTCACTCGCTCTAAAAGAAGAATTTCTCGTCCCCGACCCCGAACCCGAACCCAACACTAAACTTCCATCTCCAAACAATACAACCAAACCCAACTCTCTCCCACTCCCACCCAAAAGATCTTCCACGAAAGATCGCCACACAAAAGTCGAAGGCCGTGGCCGAAGAATCCGAATCCCCGCCACTTGCGCCGCACGTATCTTCCAATTAACACGAGAGCTCGGCCATAAATCCGACGGCGAAACCATCCGTTGGCTTCTCGAACGTGCCGAGCACGCTATCATCGCCGCCACCGGCACCGGCACCGTCCCGGCCATCGCCATGTCCGTTAACGGAACACTCAAAATTCCAACGTCCACCATTCCCGCCACCACCAGTGCCAACAACACCACTCCCTCTTCCGACCAAGACGTCGGTAAGAAAAGACGTAAACGCCCCGCCAACAGCGAATACGTTGATCTAAACGACGACGACGGTTCCGTTTCCGTTCAGCAAACCGGTTTTCCACAAGGGTTAGTTCCAGTGTGGGCGATCCCATCAAACGCTATTATTCCGGGAGCTGTTTTCATGCTTCCTTCTTCTGCTCCTCCTTCAAGCCTTCAATATCCTCAGCTTTTCTCATTCCCTGCCACGCCAGCCAGACCTATTTCTTCTGTTTTTCTATCGAAGCCCATGATTTCAACATCATCATCCCACGCTCAATCTACCTCAGCTTTTGCTAATTCTTCTACTTCCATATCTCAATCAGTCATGGCGCCTATTTCATCTTCTACCATTCCCACGAGTAGCAGCAGTAATAATAATAATAATAATATCAAAGCTCAGGTGCTTCGGGATTTTTCGTTGGAGATTTATGATAAAGAAGAGCTTCAATTCATGTCTCGCTCTTCCCCTCAGTGA 999 48.25 MKNNDVQKQEREEEEDLRINDSDDPSNSNHRHHLSLALKEEFLVPDPEPEPNTKLPSPNNTTKPNSLPLPPKRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEHAIIAATGTGTVPAIAMSVNGTLKIPTSTIPATTSANNTTPSSDQDVGKKRRKRPANSEYVDLNDDDGSVSVQQTGFPQGLVPVWAIPSNAIIPGAVFMLPSSAPPSSLQYPQLFSFPATPARPISSVFLSKPMISTSSSHAQSTSAFANSSTSISQSVMAPISSSTIPTSSSSNNNNNNIKAQVLRDFSLEIYDKEELQFMSRSSPQ 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38340984 38341982 + evm.model.ptg000021l.1174 HCH13g1174 557679

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1174 332 MobiDBLite consensus disorder prediction 73 89 - -
HCH13g1174 332 MobiDBLite consensus disorder prediction 152 193 - -
HCH13g1174 332 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 57 295 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
HCH13g1174 332 MobiDBLite consensus disorder prediction 1 90 - -
HCH13g1174 332 MobiDBLite consensus disorder prediction 152 168 - -
HCH13g1174 332 Pfam TCP family transcription factor 75 171 IPR017887 -
HCH13g1174 332 ProSiteProfiles TCP domain profile. 76 130 IPR017887 -
HCH13g1174 332 MobiDBLite consensus disorder prediction 169 185 - -
HCH13g1174 332 MobiDBLite consensus disorder prediction 55 72 - -
HCH13g1174 332 MobiDBLite consensus disorder prediction 1 47 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1174 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1174 HCH-Chr13:38340984 HCH9g0048 HCH-Chr9:277479 2.30E-28 dispersed
HCH11g1182 HCH-Chr11:44152374 HCH13g1174 HCH-Chr13:38340984 2.20E-44 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g0544 . 28 238 TCP Transcription Factor Family AT5G23280 57.8 2.0e-56 216.1
HCH10g1153 . 22 252 TCP Transcription Factor Family AT5G23280 54.5 2.4e-54 209.1
HCH13g1174 . 64 332 TCP Transcription Factor Family AT2G45680 55.0 3.5e-62 235.7
HCH1g0935 . 76 180 TCP Transcription Factor Family AT3G47620 85.0 1.9e-42 170.6
HCH3g0046 . 52 161 TCP Transcription Factor Family AT3G47620 79.3 1.9e-39 160.6
HCH1g1177 . 127 209 TCP Transcription Factor Family AT3G47620 89.2 2.6e-36 150.2
HCH9g0048 . 1 307 TCP Transcription Factor Family AT3G27010 56.5 1.9e-67 253.1
HCH1g0544 . 25 236 TCP Transcription Factor Family AT5G08330 60.9 3.3e-56 215.3
HCH10g1153 . 1 251 TCP Transcription Factor Family AT5G08330 51.9 2.1e-55 212.6
HCH8g1238 . 33 227 TCP Transcription Factor Family AT5G60970 51.3 2.5e-44 176.4
HCH9g0307 . 31 131 TCP Transcription Factor Family AT3G02150 75.7 2.0e-38 156.8
HCH6g0648 . 21 224 TCP Transcription Factor Family AT2G31070 51.4 1.7e-40 163.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011535 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32854 PF03634 TCP 3.70E-29 No_clan HCH TF