Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1175 ATGGATAATTATGGTTCTTCATATCCTTATCATAATCCATATGCATACACTCCTCCTCAATATCCACCACCTCCTCAGCATTATCCGCCTCCGAATTCGGATCCATATGCACGTCCGCCTTACCCGTACCCTTATAATCCTCCACATCCTTCTGCATTTGTATACCCCCCAGCACCTCTTCCTCCCCATTCTATCCCATTAGAGTATCATCAACCTCCACGTCCACATTCTGCCTCTATACCGTATCCATATCCATATTTGGACGTCTCAGCTAATAATAATGCTGCTCAGCCTCAGCCATCCATTCAATATCATAATAATAATTTTCAACATGGTTCATTCCCTTATCATTATCAAGAATCTAACCCATACCCGCCACCTGAAAGTCAGTACCCGCCACCTGAAAGTCAATACCCGCCCCCTTCGCGAGTGAATAGCTTCTCTGGCCACTACCGACATGATAGTATTGATTCTGCCACTCCTCATCCTACTGCATACCCGCCTCTAGATGATCTCTTGAGCAATGTACATTTGTCTGATTATCAACCGACTGCTCCTGCATCTGCTCCTGCATCTCCTCCTGCGCCTGCCGCACCTGTGGCTTCATTATTGGCGAATTCACCTCAAAGTTCAAGATATGATCGGCAAAATCGATTGTATGGGTTTCCAAATTCGTCTTTTTCTAATTCCGAAGTGGGTTATTCAGAACGAATGGATTCATCCAATCCACCTACCTATTCCCATTCAGGCTCATTCAATGAATCTCAACATGGTCAGAATATGGGAATTGTTTTAGTGCCGAACAAATCATCCTTGAAAGTCTTGCTTTTACATGGGAACTTAGAAATATGGGTTAATGAAGCAAAAAATCTTCCAAATATGGACATGTTTCACAAGACCTTGGGAGATATGTTTGCCAAATTACCGGGGAATATGAGCAATAAAATTGAAGGGCACATGAGTCAACATAAGATCACCAGTGATCCTTATGTGTCAATCTCAGTAGCAAATGCAGTGATTGGAAGGACTTTTGTAATAAGCAATAGTGAAAACCCTGTATGGCAGCAACATTTCTATGTTCCAGTTGCACATTCTGCTGCTGAAGTTCATTTTGTTGTTAAAGACAGTGATGTTGTTGGTTCACAGCTAATAGGAATTGTAGCAATTCCTGCAGAACAAATATATTCAGGGTCTATAGTTGAGGGAACCTTCCCAATTCTACTTAATGGGAAGCCATGTAAGCCTGGAGCTGTTTTAAATATATCTATTCAATATACCCCAATAGAGAAGCTTAGTACTTATCATCATGGAGTAGGTGCAGGCCCGGATTATCAGGGGGTTCCTGATACATATTTCCCCCTTAGAAAGGGTGGAGCTGTCACTCTTTATCAAGATGCCCATGTTCCAGATGGACACCTTCCAAATTTGATGCTTGATAATGGTATGTATTATGCACATGGAAAGTGTTGGCACGACATCTTTGATTCCATACGTCAGGCTCGCCGATTGATTTACATAACTGGGTGGTCAGTGTGGCACAAAGTGAAACTAGTTCGTGATACTGGTTATGGAATAGATTGTACCCTTGGAGATCTTCTGAGGTCCAAGTCCCAGGAGGGTGTGAGAGTTTTGCTTCTTGTTTGGGATGATCCCACTTCTAGGAGCATTTTGGGTTATAAAACGGATGGTTTCATGCAAACCCATGATGAGGAAACCCGCCGTTTTTTCAAACACTCCTCTGTACAAGTGATACTTTGTCCTCGCATTGCAGGAAAACGACATAGCTGGGTGAAGCAAAAGGAAGTTGGAACTATTTATACACACCATCAAAAAACAGTAATTGTGGATGCTGACGCGGGAAATAATAGAAGAAAAATCATAGCTTTTGTTGGAGGACTTGATTTATGTGACGGGCGATATGATACCCCCTCACATCCTATATTTAGAACGTTACAAACAATACACAAGGATGATTATCATAATCCTACTTACACGGGTAATGTTGTTGATTGTCCAAGAGAACCATGGCATGATTTGCACAGCAAAATTGGTGGTCCAGCAGCATATGATGTTTTGGCCAACTTTGAGGAGCGATGGAGGAGGGCTTCAAAACCTAGTGGGATAAAGAAATTGAAATCATATGATGATGCTTTGCTGAGAATAGAGAGAATCCACGACATAGTTGGAATTTCTGATGCTTACTGTACTAGTGAAAATGACCCTGAATCATGGCATGTGCAGATTTTTCGATCAATTGATTCATCTTCTGTTAAAGAATTCCCAAAGGATCCTAAAGATGCTCCGAGCAAGAACCTTGTATGTGGTAAGAATGTGCTGATTGACATGAGTATACACACAGCATATGTGAAAGCTATTCGTGCAGCCCAGCATTTCATTTATATAGAGAACCAGTACTTCATTGGGTCATCCTTCAATTGGAATTCAAATAAAGATATAGGTGCCAACAATTTGATTCCAATGGAAATTGCGCTTAAGATTGCTAATAAAATCAGAGCAAATGAGAGATTTTCCGCATATATTGTCCTCCCCATGTGGCCAGAGGGTGTTCCAACTGCTGCTGCTACTCAGAGGATACTATTTTGGCAGCATAAAACCATGCAAATGATGTATGAGGTAATTTACAAGGCTTTGGTGGAGGTTGGTCTTGAGGGCGCATTCTCTCCTCAAGACTATTTGAACTTCTTTTGTCTTGGAAATCGTGAGGCTATGGATGGAAATGAACCTTTATGTGCTGGAAGTCCAAATGCAGAAAACACCCCTCAGGCACTTAGTCGAAAAAGCAGGAGGTTTATGATATATGTTCATTCTAAAGGCATGATAGTTGACGATGAATACGTGATTTTGGGATCTGCTAACATCAATCAGAGATCCATGGAGGGTACTAGAGACACTGAGATTGCCATGGGATCCTACCAACCTCATTATACTTGGGCAAGGAAATTCTCGCATCCTCACGGACAGATTTACGGATACAGGATGTCGTTGTGGGCGGAGCATACGGGAACGGTTGAAGACTGTTTCAATCATCCAGAGAGCCTTGAATGTGTGAGGAGAGTTAGGCAAATGGGAGAAATGAATTGGAAACAATTTGCTGATGAGGAGGTGACAGAGATGAGGGGACACCTTTTGAAATACCCTGTTGAAGTTGATAGAAACGGGAAGGTGAAGCCTCTTCCTGGATGTGAAAATTTTCCAGATGTAGGAGGTAAAATAGTTGGTTCATTTCTTGGTATTCAGGAAAATCTCACCATTTAA 3276 41.82 MDNYGSSYPYHNPYAYTPPQYPPPPQHYPPPNSDPYARPPYPYPYNPPHPSAFVYPPAPLPPHSIPLEYHQPPRPHSASIPYPYPYLDVSANNNAAQPQPSIQYHNNNFQHGSFPYHYQESNPYPPPESQYPPPESQYPPPSRVNSFSGHYRHDSIDSATPHPTAYPPLDDLLSNVHLSDYQPTAPASAPASPPAPAAPVASLLANSPQSSRYDRQNRLYGFPNSSFSNSEVGYSERMDSSNPPTYSHSGSFNESQHGQNMGIVLVPNKSSLKVLLLHGNLEIWVNEAKNLPNMDMFHKTLGDMFAKLPGNMSNKIEGHMSQHKITSDPYVSISVANAVIGRTFVISNSENPVWQQHFYVPVAHSAAEVHFVVKDSDVVGSQLIGIVAIPAEQIYSGSIVEGTFPILLNGKPCKPGAVLNISIQYTPIEKLSTYHHGVGAGPDYQGVPDTYFPLRKGGAVTLYQDAHVPDGHLPNLMLDNGMYYAHGKCWHDIFDSIRQARRLIYITGWSVWHKVKLVRDTGYGIDCTLGDLLRSKSQEGVRVLLLVWDDPTSRSILGYKTDGFMQTHDEETRRFFKHSSVQVILCPRIAGKRHSWVKQKEVGTIYTHHQKTVIVDADAGNNRRKIIAFVGGLDLCDGRYDTPSHPIFRTLQTIHKDDYHNPTYTGNVVDCPREPWHDLHSKIGGPAAYDVLANFEERWRRASKPSGIKKLKSYDDALLRIERIHDIVGISDAYCTSENDPESWHVQIFRSIDSSSVKEFPKDPKDAPSKNLVCGKNVLIDMSIHTAYVKAIRAAQHFIYIENQYFIGSSFNWNSNKDIGANNLIPMEIALKIANKIRANERFSAYIVLPMWPEGVPTAAATQRILFWQHKTMQMMYEVIYKALVEVGLEGAFSPQDYLNFFCLGNREAMDGNEPLCAGSPNAENTPQALSRKSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGSYQPHYTWARKFSHPHGQIYGYRMSLWAEHTGTVEDCFNHPESLECVRRVRQMGEMNWKQFADEEVTEMRGHLLKYPVEVDRNGKVKPLPGCENFPDVGGKIVGSFLGIQENLTI 1091
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38343685 38353218 - evm.model.ptg000021l.1175 HCH13g1175 557680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1175 1091 PANTHER PHOSPHOLIPASE D 276 1079 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
HCH13g1175 1091 MobiDBLite consensus disorder prediction 222 254 - -
HCH13g1175 1091 MobiDBLite consensus disorder prediction 1 43 - -
HCH13g1175 1091 CDD C2_plant_PLD 273 426 - -
HCH13g1175 1091 Gene3D C2 domain 274 416 IPR035892 -
HCH13g1175 1091 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 937 964 IPR001736 GO:0003824(InterPro)
HCH13g1175 1091 MobiDBLite consensus disorder prediction 91 117 - -
HCH13g1175 1091 Pfam Phospholipase D Active site motif 606 639 IPR001736 GO:0003824(InterPro)
HCH13g1175 1091 Pfam Phospholipase D Active site motif 939 964 IPR001736 GO:0003824(InterPro)
HCH13g1175 1091 Gene3D Endonuclease Chain A 748 990 - -
HCH13g1175 1091 FunFam Phospholipase D delta 480 717 - -
HCH13g1175 1091 Pfam Phospholipase D C terminal 1011 1081 IPR024632 -
HCH13g1175 1091 ProSiteProfiles C2 domain profile. 260 404 IPR000008 -
HCH13g1175 1091 SMART pld_4 604 639 IPR001736 GO:0003824(InterPro)
HCH13g1175 1091 SMART pld_4 937 964 IPR001736 GO:0003824(InterPro)
HCH13g1175 1091 MobiDBLite consensus disorder prediction 15 43 - -
HCH13g1175 1091 SMART C2_3c 280 403 IPR000008 -
HCH13g1175 1091 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 277 428 IPR035892 -
HCH13g1175 1091 SUPERFAMILY Phospholipase D/nuclease 734 1023 - -
HCH13g1175 1091 FunFam Phospholipase D 751 983 - -
HCH13g1175 1091 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 604 639 IPR001736 GO:0003824(InterPro)
HCH13g1175 1091 MobiDBLite consensus disorder prediction 91 201 - -
HCH13g1175 1091 Pfam C2 domain 279 405 IPR000008 -
HCH13g1175 1091 SUPERFAMILY Phospholipase D/nuclease 446 703 - -
HCH13g1175 1091 Gene3D Endonuclease Chain A 480 717 - -
HCH13g1175 1091 MobiDBLite consensus disorder prediction 120 140 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1175 HCH-Chr13:38343685 HCH6g0948 HCH-Chr6:44300287 0.00E+00 dispersed
HCH13g1175 HCH-Chr13:38343685 HCH4g0820 HCH-Chr4:5270106 5.00E-269 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1175 K01115 - csv:101218942 1823.91