Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1176 ATGGTGAGAGGGAAGACGCAGATGCGGCTGATCGAGAACACGACAAGCCGGCAAGTTACCTTTTCCAAGAGAAGAAATGGATTAATGAAGAAAGCTTTTGAGCTTTCAGTTTTGTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCAAGAGGAAAGCTTTATGAATTTGCAAGTTCAAGCATGCAGGCAACTGTAGAGCGTTATCGAAAGCACACCAAAGACAAAGAAGCCTTCAATTCATCTCCTTTAAAAGATATGCAGATGCAGCATCTGAATCAGGAAGAAGCAGCAGACCTGATGAAGAAGATAGAGCTACTTGAAGTTTCAAAACGGAGAATGTTGGGAGAAAATCTGGGATCTTGCTCCATTGAAGAACTTCAGCAGATTGAACAACAGTTGGAGAAAAGCATTGGAAAAATAAGAACAAGAAAGGTAGAAGTATATGAAGAACAGATTAAACTACTAAAACAAAAGGAGAAAGCCCTAACAGATGAAAATATTAAGCTCCTTCAGAAGTGGGAGAGTGAACCAGAGAAAGGAGTGAATGAAGGAGGAGAAAATGTGTTAAACTATGCAGAAAGCAGCAGTCCAAGTTCAGAGGTGGAGACTGAGTTGTTCATTGGGCCACCTGAAAGAAGACCCAGACTACTTCTTACCCTTAATTGA 669 40.96 MVRGKTQMRLIENTTSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQATVERYRKHTKDKEAFNSSPLKDMQMQHLNQEEAADLMKKIELLEVSKRRMLGENLGSCSIEELQQIEQQLEKSIGKIRTRKVEVYEEQIKLLKQKEKALTDENIKLLQKWESEPEKGVNEGGENVLNYAESSSPSSEVETELFIGPPERRPRLLLTLN 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38373318 38387778 + evm.model.ptg000021l.1176 HCH13g1176 557681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1176 222 Coils Coil 124 144 - -
HCH13g1176 222 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1176 222 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1176 222 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1176 222 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1176 222 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 185 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH13g1176 222 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH13g1176 222 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH13g1176 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1176 222 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1176 222 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1176 222 SUPERFAMILY SRF-like 3 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1176 222 Coils Coil 146 173 - -
HCH13g1176 222 Pfam K-box region 89 174 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH13g1176 222 FunFam MADS-box transcription factor 1 13 83 - -
HCH13g1176 222 Gene3D - 13 94 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1176 HCH-Chr13:38373318 HCH5g0459 HCH-Chr5:3088096 2.60E-52 dispersed
HCH13g1176 HCH-Chr13:38373318 HCH13g1177 HCH-Chr13:38413132 8.80E-32 tandem
HCH11g1176 HCH-Chr11:44079319 HCH13g1176 HCH-Chr13:38373318 5.20E-32 wgd
HCH13g1176 HCH-Chr13:38373318 HCH14g0447 HCH-Chr14:33491842 1.60E-25 wgd
HCH13g1176 HCH-Chr13:38373318 HCH4g0278 HCH-Chr4:1786307 8.00E-25 wgd
HCH13g1176 HCH-Chr13:38373318 HCH7g1576 HCH-Chr7:48136186 5.50E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32855 PF01486 K-box 1.60E-23 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1176 - - - 0.0