Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1177 ATGGGAAGGGGAAGAGTAGAACTGAAGAGAATAGAGAATAAAATAAATCGTCAGGTTACTTTCTCAAAGAGGAGAAATGGGTTGCTTAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGCTGAAATTGCTTTGATCATTTTTTCCAGCCGTGGCAAACTCTATGAATTTGGAAGTTCTGGTACCACCAAAACTCTGGAGCGATATCAACGTTGCTGCTTCACTCCTCAAGACAACCCTATTGAACGCGAAACCCAGAGCTGGTTCCAGGAAATCTCAAAACTGAAAGCTAAATATGATTCTCTTTGTCGCACTCATAGGCATCTGCTTGGGGAAGATCTTGGACCACTGAGTGTAAAGGAGTTGCAAAATCTTGAAAAGCAACTTGAAGCTGCCCTTGCTCAAGCTAGACAAAGGAAGACTCAGATTATGGTTCAACAGATGGAAGATCTGCGCAAAAAGGAGCGTCAACTTGGGGATCTGAACAAGGAGCTGAGGATTAAGCTTGAGACAGAAGGACAGAATATGAAAGCCATTCAAAGCTTTTGGAACCCTAACTCAGCAGCAGCAGCAACTGCACATACCAATTTCCCGTTTCATCACCCTTCTCAATCTACCACCATCGATTGCCAACATGAGCCTATCTTACAAATAGGGTACCAGAATTATTTCTCAGCTGAGGGGTCATCTGTCCAAAAGAGCATGACATGTGAGACCAACTTCATACAAGGATGGGTTATTTGA 744 42.61 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEIALIIFSSRGKLYEFGSSGTTKTLERYQRCCFTPQDNPIERETQSWFQEISKLKAKYDSLCRTHRHLLGEDLGPLSVKELQNLEKQLEAALAQARQRKTQIMVQQMEDLRKKERQLGDLNKELRIKLETEGQNMKAIQSFWNPNSAAAATAHTNFPFHHPSQSTTIDCQHEPILQIGYQNYFSAEGSSVQKSMTCETNFIQGWVI 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38413132 38418075 - evm.model.ptg000021l.1177 HCH13g1177 557682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1177 247 Pfam K-box region 83 169 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH13g1177 247 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH13g1177 247 FunFam MADS-box transcription factor 1 13 84 - -
HCH13g1177 247 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1177 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1177 247 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH13g1177 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1177 247 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1177 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 193 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH13g1177 247 Gene3D - 13 79 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1177 247 Coils Coil 119 171 - -
HCH13g1177 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1177 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1177 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1177 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1176 HCH-Chr11:44079319 HCH13g1177 HCH-Chr13:38413132 3.80E-51 dispersed
HCH13g1177 HCH-Chr13:38413132 HCH9g0326 HCH-Chr9:2032118 7.70E-53 dispersed
HCH13g1176 HCH-Chr13:38373318 HCH13g1177 HCH-Chr13:38413132 8.80E-32 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32856 PF01486 K-box 2.30E-29 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1177 K09264 - csv:101219421 390.578