Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1196 ATGGTTAGCAATTTTGAATGTGTTGTTTCAAATCTTGTTTATGTAGAAAATACCAATAAACGCTCTGTCGATCTTGGTTTTAATGCCACTCATGATATTGATTCACCCCTTTCTTTTTCAAAACATAACAATTTCATTCACAATGAATTTTTGATGGGATTTCCATTGGAGAGTGATGAAATAATGGAAACGTTATTTGAGAGGGAAAGTGAGCATTTGCCTGATGCTGATTACTTCCACAGATTGCAGAGTGGAAAGCTAGACTTGAGCATTAGGATAAATGCTCTTGAATGGATTTGGAAGGCTTATGTTCATTATAATTTTGGGCCATCAACTATTTGTCTATCGATTAACTATATGGATCGGTTCCTCTCAGCCTATGAGTTGCCAAGAGGTAAATGCTGGACTGTGCAACTTTTAGCTGTAGCTTGTCTATCTCTAGCAGCCAAGATGGAAGAGATTAGGGTTCCCCATCCTGTAGATTTACAGGTTGGAGAACCAAAGTATGTATTTGAAGGTAAAACTATACATAGAATGGAGCTTCTGGTGCTGAGCACCTTGAAATGGAGATTATGTGCTATCACACCTTGCTCTTTCATTAGCTTCTACCTCACCCAGATGAATGGTGGTCAGTGTCCCTCGATGAAATCTATTTCCCAATCATTAGAACTCATATTGAGTGCAAACAAAGGTATTGATGTATTGGAATTCAAGCCATCTGAAATTGCTGCAGCTATAGCTATTTATATTTTGGAAGCACAACCAGCCCTTGACAGTAAGGCAATGTCTTGTCTCATAAATGTAGATAAGGTAAGAGTTTTGAAATGTGTAGAACTAATAAAAGATGTGTCATTGGGTAGTTGGTGTGGGATTAGCGGAATTGGCACCGTTTCACTTTCATCTGCACCAAAGAGCCCAGATGGGGTGTTGGATGGTGCATGCTTGAGCTATAAAAGTGATGATTTAACAGTTGGGTCATGTGCAAATTCTTCACATATTAATAATAATAATGCAGATATTGAGAGGAAGAAACCAGATGATGAGGATTTCAAGTCATGA 1059 38.15 MVSNFECVVSNLVYVENTNKRSVDLGFNATHDIDSPLSFSKHNNFIHNEFLMGFPLESDEIMETLFERESEHLPDADYFHRLQSGKLDLSIRINALEWIWKAYVHYNFGPSTICLSINYMDRFLSAYELPRGKCWTVQLLAVACLSLAAKMEEIRVPHPVDLQVGEPKYVFEGKTIHRMELLVLSTLKWRLCAITPCSFISFYLTQMNGGQCPSMKSISQSLELILSANKGIDVLEFKPSEIAAAIAIYILEAQPALDSKAMSCLINVDKVRVLKCVELIKDVSLGSWCGISGIGTVSLSSAPKSPDGVLDGACLSYKSDDLTVGSCANSSHINNNNADIERKKPDDEDFKS 352
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 39144535 39146349 + evm.model.ptg000021l.1196 HCH13g1196 557701
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1196 352 FunFam D6-type cyclin 189 278 - -
HCH13g1196 352 Pfam Cyclin, N-terminal domain 60 192 IPR006671 -
HCH13g1196 352 PANTHER CYCLINS 52 280 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
HCH13g1196 352 SUPERFAMILY Cyclin-like 55 191 IPR036915 -
HCH13g1196 352 SMART cyclin_7 97 185 IPR013763 -
HCH13g1196 352 Pfam Cyclin, C-terminal domain 194 284 IPR004367 -
HCH13g1196 352 ProSitePatterns Cyclins signature. 92 123 IPR048258 -
HCH13g1196 352 Gene3D - 75 192 - -
HCH13g1196 352 Gene3D - 63 278 - -
HCH13g1196 352 CDD CYCLIN_AtCycD-like_rpt1 92 189 - -
HCH13g1196 352 FunFam D2/4-type cyclin 75 188 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1196 HCH-Chr13:39144535 HCH4g0920 HCH-Chr4:5898673 1.30E-40 dispersed
HCH9g0688 HCH-Chr9:4591929 HCH13g1196 HCH-Chr13:39144535 1.00E-25 transposed
HCH13g1196 HCH-Chr13:39144535 HCH4g0259 HCH-Chr4:1606933 1.40E-79 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1196 K18810 - mdm:103419068 344.739