Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH13g1196 | ATGGTTAGCAATTTTGAATGTGTTGTTTCAAATCTTGTTTATGTAGAAAATACCAATAAACGCTCTGTCGATCTTGGTTTTAATGCCACTCATGATATTGATTCACCCCTTTCTTTTTCAAAACATAACAATTTCATTCACAATGAATTTTTGATGGGATTTCCATTGGAGAGTGATGAAATAATGGAAACGTTATTTGAGAGGGAAAGTGAGCATTTGCCTGATGCTGATTACTTCCACAGATTGCAGAGTGGAAAGCTAGACTTGAGCATTAGGATAAATGCTCTTGAATGGATTTGGAAGGCTTATGTTCATTATAATTTTGGGCCATCAACTATTTGTCTATCGATTAACTATATGGATCGGTTCCTCTCAGCCTATGAGTTGCCAAGAGGTAAATGCTGGACTGTGCAACTTTTAGCTGTAGCTTGTCTATCTCTAGCAGCCAAGATGGAAGAGATTAGGGTTCCCCATCCTGTAGATTTACAGGTTGGAGAACCAAAGTATGTATTTGAAGGTAAAACTATACATAGAATGGAGCTTCTGGTGCTGAGCACCTTGAAATGGAGATTATGTGCTATCACACCTTGCTCTTTCATTAGCTTCTACCTCACCCAGATGAATGGTGGTCAGTGTCCCTCGATGAAATCTATTTCCCAATCATTAGAACTCATATTGAGTGCAAACAAAGGTATTGATGTATTGGAATTCAAGCCATCTGAAATTGCTGCAGCTATAGCTATTTATATTTTGGAAGCACAACCAGCCCTTGACAGTAAGGCAATGTCTTGTCTCATAAATGTAGATAAGGTAAGAGTTTTGAAATGTGTAGAACTAATAAAAGATGTGTCATTGGGTAGTTGGTGTGGGATTAGCGGAATTGGCACCGTTTCACTTTCATCTGCACCAAAGAGCCCAGATGGGGTGTTGGATGGTGCATGCTTGAGCTATAAAAGTGATGATTTAACAGTTGGGTCATGTGCAAATTCTTCACATATTAATAATAATAATGCAGATATTGAGAGGAAGAAACCAGATGATGAGGATTTCAAGTCATGA | 1059 | 38.15 | MVSNFECVVSNLVYVENTNKRSVDLGFNATHDIDSPLSFSKHNNFIHNEFLMGFPLESDEIMETLFERESEHLPDADYFHRLQSGKLDLSIRINALEWIWKAYVHYNFGPSTICLSINYMDRFLSAYELPRGKCWTVQLLAVACLSLAAKMEEIRVPHPVDLQVGEPKYVFEGKTIHRMELLVLSTLKWRLCAITPCSFISFYLTQMNGGQCPSMKSISQSLELILSANKGIDVLEFKPSEIAAAIAIYILEAQPALDSKAMSCLINVDKVRVLKCVELIKDVSLGSWCGISGIGTVSLSSAPKSPDGVLDGACLSYKSDDLTVGSCANSSHINNNNADIERKKPDDEDFKS | 352 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 39144535 | 39146349 | + | evm.model.ptg000021l.1196 | HCH13g1196 | 557701 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH13g1196 | 352 | FunFam | D6-type cyclin | 189 | 278 | - | - | |
HCH13g1196 | 352 | Pfam | Cyclin, N-terminal domain | 60 | 192 | IPR006671 | - | |
HCH13g1196 | 352 | PANTHER | CYCLINS | 52 | 280 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
HCH13g1196 | 352 | SUPERFAMILY | Cyclin-like | 55 | 191 | IPR036915 | - | |
HCH13g1196 | 352 | SMART | cyclin_7 | 97 | 185 | IPR013763 | - | |
HCH13g1196 | 352 | Pfam | Cyclin, C-terminal domain | 194 | 284 | IPR004367 | - | |
HCH13g1196 | 352 | ProSitePatterns | Cyclins signature. | 92 | 123 | IPR048258 | - | |
HCH13g1196 | 352 | Gene3D | - | 75 | 192 | - | - | |
HCH13g1196 | 352 | Gene3D | - | 63 | 278 | - | - | |
HCH13g1196 | 352 | CDD | CYCLIN_AtCycD-like_rpt1 | 92 | 189 | - | - | |
HCH13g1196 | 352 | FunFam | D2/4-type cyclin | 75 | 188 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH13g1196 | HCH-Chr13:39144535 | HCH4g0920 | HCH-Chr4:5898673 | 1.30E-40 | dispersed | |
HCH9g0688 | HCH-Chr9:4591929 | HCH13g1196 | HCH-Chr13:39144535 | 1.00E-25 | transposed | |
HCH13g1196 | HCH-Chr13:39144535 | HCH4g0259 | HCH-Chr4:1606933 | 1.40E-79 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH13g1196 | K18810 | - | mdm:103419068 | 344.739 |