Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1199 ATGAGTGGGAATAATAATGGCGGTGGGCCTTGTGGAGCCTGCAAATTCCTTAGAAGAAAGTGTGTCAAAGGCTGCATTTTTGCTCCATATTTTGATTCAGAGCAAGGCACGGCTCATTTTGCGGCGGTGCACAAAGTTTTTGGAGCCAGCAATGCTTCAAAGCTGTTAATGCGCATCCCTGATCCCAACAAGCGCCTTGATGCTGTCGTTACTCTTTGTTATGAGGCTTTCGCCAGAGTTAGAGACCCTGTTTACGGCTGCGTTGCTCATATCTTCTCCCTTCAGCAACAGGTGGTAAATTTGCAAGCAGAGTTAGCGTACATTCAGGCAAGACTTTCTACTTTGCAGCGCCTGTTGCCGCCTCCACTATCGACCGGCCGCCACTCCTCATCGTCGGAAATTGCATCAGCTTCCGACTTAGCTTTTCTATCAAACGTTCCAATGCTTCTGGACCCTATTGAAATGCAGCCAGTTTCTAGTGATCATATGACCAGCTTTTTTAATCCATTAATTGAGCAAGATCAGATCGACGAAGAGGGGAATCTTCAATGTTTGGCTCGAGAATTCGTTTCCATGTACTTGCCCGGAGTAAGATTCCGGCCATCAACTTCTCAATTTTAA 621 46.38 MSGNNNGGGPCGACKFLRRKCVKGCIFAPYFDSEQGTAHFAAVHKVFGASNASKLLMRIPDPNKRLDAVVTLCYEAFARVRDPVYGCVAHIFSLQQQVVNLQAELAYIQARLSTLQRLLPPPLSTGRHSSSSEIASASDLAFLSNVPMLLDPIEMQPVSSDHMTSFFNPLIEQDQIDEEGNLQCLAREFVSMYLPGVRFRPSTSQF 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39179676 39181687 - evm.model.ptg000021l.1199 HCH13g1199 557704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1199 206 PANTHER LOB DOMAIN CONTAINING PROTEIN 6 132 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
HCH13g1199 206 Pfam Lateral organ boundaries (LOB) domain 10 109 IPR004883 -
HCH13g1199 206 ProSiteProfiles LOB domain profile. 9 112 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1199 HCH-Chr13:39179676 HCH5g0078 HCH-Chr5:500804 6.50E-37 dispersed
HCH13g1199 HCH-Chr13:39179676 HCH13g1200 HCH-Chr13:39227638 1.00E-45 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32858 PF03195 LOB 2.50E-36 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1199 - - - 0.0