Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH13g1199 | ATGAGTGGGAATAATAATGGCGGTGGGCCTTGTGGAGCCTGCAAATTCCTTAGAAGAAAGTGTGTCAAAGGCTGCATTTTTGCTCCATATTTTGATTCAGAGCAAGGCACGGCTCATTTTGCGGCGGTGCACAAAGTTTTTGGAGCCAGCAATGCTTCAAAGCTGTTAATGCGCATCCCTGATCCCAACAAGCGCCTTGATGCTGTCGTTACTCTTTGTTATGAGGCTTTCGCCAGAGTTAGAGACCCTGTTTACGGCTGCGTTGCTCATATCTTCTCCCTTCAGCAACAGGTGGTAAATTTGCAAGCAGAGTTAGCGTACATTCAGGCAAGACTTTCTACTTTGCAGCGCCTGTTGCCGCCTCCACTATCGACCGGCCGCCACTCCTCATCGTCGGAAATTGCATCAGCTTCCGACTTAGCTTTTCTATCAAACGTTCCAATGCTTCTGGACCCTATTGAAATGCAGCCAGTTTCTAGTGATCATATGACCAGCTTTTTTAATCCATTAATTGAGCAAGATCAGATCGACGAAGAGGGGAATCTTCAATGTTTGGCTCGAGAATTCGTTTCCATGTACTTGCCCGGAGTAAGATTCCGGCCATCAACTTCTCAATTTTAA | 621 | 46.38 | MSGNNNGGGPCGACKFLRRKCVKGCIFAPYFDSEQGTAHFAAVHKVFGASNASKLLMRIPDPNKRLDAVVTLCYEAFARVRDPVYGCVAHIFSLQQQVVNLQAELAYIQARLSTLQRLLPPPLSTGRHSSSSEIASASDLAFLSNVPMLLDPIEMQPVSSDHMTSFFNPLIEQDQIDEEGNLQCLAREFVSMYLPGVRFRPSTSQF | 206 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 39179676 | 39181687 | - | evm.model.ptg000021l.1199 | HCH13g1199 | 557704 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH13g1199 | 206 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 6 | 132 | - | GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER) | |
HCH13g1199 | 206 | Pfam | Lateral organ boundaries (LOB) domain | 10 | 109 | IPR004883 | - | |
HCH13g1199 | 206 | ProSiteProfiles | LOB domain profile. | 9 | 112 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH13g1199 | HCH-Chr13:39179676 | HCH5g0078 | HCH-Chr5:500804 | 6.50E-37 | dispersed | |
HCH13g1199 | HCH-Chr13:39179676 | HCH13g1200 | HCH-Chr13:39227638 | 1.00E-45 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32858 | PF03195 | LOB | 2.50E-36 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH13g1199 | - | - | - | 0.0 |