Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1200 ATGAGCACTTCTGCTAATCCAAGTACGAGCAGTGCCACCTCCAGCGGTGGCGGTGGCAGTGGGGGTGGACCCGGGAGCAGTAGCGGTAGCGGTGGTGGCGGCGGGCCATGTGGTGCTTGTAAGTTTTTAAGAAGGAAGTGTGTGCCCGGTTGTATATTTGCTCCGTATTTTGACTCCGAGCAAGGGGCGGCTCATTTTGCGGCGGTGCATAAGGTGTTCGGAGCTAGTAACGTCTCCAAGCTCCTCCTTCATATTCCGGTCCACAAGCGGCTCGATGCGGTGGTCACGATTTGCTATGAGGCTCAAGCCCGGCTAAGAGATCCAGTCTATGGATGTGTTGCTCACATCTTCTCTCTTCAACAACAGGTAGTGAGTTTACAAGCTGAATTATCTTACCTTCAAGCACACCTAGCAACACTGGAGCAGCCATCACCTCCTCACCCGCCACCGCCACCTCCGCCTCCGCCGCCAGCATTCCTCACACAATTACCCCCCCTCTCAATCTTAGACCTCCCATCAGCCTCTTCACTACCGGCTACTTACGACTTATCGTCTCTTTTCGATCCCATGGGGCAACCTGCAACTGCATGGACCATGCAACAGCGGATAGATCATCGTCAATTTGGGAGCAGCAGTGTTCCGTTGCCGCCAACAACGACCGGAGAGGGTGATCTTCAAGCATTGGCTCGTGAATTGCTTCATAGACGTGGGCCGCAATCTTGCACTGATGCCTCATCACCGCCATCTCTCTCTAAATGA 759 54.15 MSTSANPSTSSATSSGGGGSGGGPGSSSGSGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFSLQQQVVSLQAELSYLQAHLATLEQPSPPHPPPPPPPPPPAFLTQLPPLSILDLPSASSLPATYDLSSLFDPMGQPATAWTMQQRIDHRQFGSSSVPLPPTTTGEGDLQALARELLHRRGPQSCTDASSPPSLSK 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39227638 39232338 + evm.model.ptg000021l.1200 HCH13g1200 557705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1200 252 MobiDBLite consensus disorder prediction 1 27 - -
HCH13g1200 252 PANTHER LOB DOMAIN CONTAINING PROTEIN 33 152 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
HCH13g1200 252 MobiDBLite consensus disorder prediction 140 161 - -
HCH13g1200 252 MobiDBLite consensus disorder prediction 1 28 - -
HCH13g1200 252 ProSiteProfiles LOB domain profile. 35 137 IPR004883 -
HCH13g1200 252 Pfam Lateral organ boundaries (LOB) domain 36 134 IPR004883 -
HCH13g1200 252 MobiDBLite consensus disorder prediction 142 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1200 HCH-Chr13:39227638 HCH5g0079 HCH-Chr5:506163 1.60E-42 dispersed
HCH13g1199 HCH-Chr13:39179676 HCH13g1200 HCH-Chr13:39227638 1.00E-45 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32859 PF03195 LOB 2.30E-38 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1200 K21994 - csv:101220603 327.791