Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1201 ATGGATCGAATTACAGAACATGGGCGTCCATTCCCACCTCCATTTCTATCCAAAGATCTCTATCTACACCAACACCACCAATTCCAACACAACTCTGAGGCTGATGATCAGGAGCAAAGCAGCGGGAGCGGGAGCGGATGCAAGAAAAGAGATCGTGAGGAGATCAATACCATCACCGCCACCGTTACGGCCACCACCGCAATCGAAAGCGAAGAATTACACGGTGCAGGAGAGAATAGTACAAGTCGACGGCCCCGTGGCCGGCCTTCCGGTTCCAAAAACAAGCCTAGGCCACCAATTATAATAACTCGAGATAGTGCAAATGCTCTGAGATCTCACGTCATGGAAATAGCTAGTGGCTGTGATATTATGGAGAGTGTCTCTACCTTTGCACGCCGCCGCCAAAGAGGTGTTTGTATTTTAAGTGGCACTGGAACTGTCACTAATGTTACCTTAAGACAGCCTGCCTCACCTGGTGCAGTCTTAACTTTACATGGAAGATTTGAAATTCTCTCCCTTTCTGGTTCCTTTTTGCCGCCACCGGCTCCACCTGCGGCTTCAGGATTGACCATCTACTTGGCTGGAGGACAAGGCCAGATAGTCGGTGGTAACGTTGTTGGACCGCTGTCGGCATCTGGTCCGGTCATTATCATGTCTGCTTCTTTCGGTAATGCGGCGTATGAGCGGCTTCCCATCGATGACGACAACGATGAAGAAACGCCGCTGCCGCCAGTTACCGGGAGTGGACCGCTCGGATCTTCTGAAATGGTTGGACAGCAACAACAACAACAGCAATGCTTCCCAGATTCTAACACAGCTCTATTTCATGGGATGCCCCAAAATCTTATGAATTCTTGTCAATTGCCAGCTGAGGAGGGATATTGGGGAGCAGGTCGTCCACCTTTTTAA 909 49.94 MDRITEHGRPFPPPFLSKDLYLHQHHQFQHNSEADDQEQSSGSGSGCKKRDREEINTITATVTATTAIESEELHGAGENSTSRRPRGRPSGSKNKPRPPIIITRDSANALRSHVMEIASGCDIMESVSTFARRRQRGVCILSGTGTVTNVTLRQPASPGAVLTLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQIVGGNVVGPLSASGPVIIMSASFGNAAYERLPIDDDNDEETPLPPVTGSGPLGSSEMVGQQQQQQQCFPDSNTALFHGMPQNLMNSCQLPAEEGYWGAGRPPF 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39302289 39303197 + evm.model.ptg000021l.1201 HCH13g1201 557706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1201 302 MobiDBLite consensus disorder prediction 231 266 - -
HCH13g1201 302 MobiDBLite consensus disorder prediction 1 101 - -
HCH13g1201 302 PIRSF ESCAROLA 17 302 IPR014476 GO:0003680(InterPro)
HCH13g1201 302 Pfam Plants and Prokaryotes Conserved (PCC) domain 111 222 IPR005175 -
HCH13g1201 302 FunFam AT-hook motif nuclear-localized protein 110 238 - -
HCH13g1201 302 MobiDBLite consensus disorder prediction 252 266 - -
HCH13g1201 302 SUPERFAMILY AF0104/ALDC/Ptd012-like 107 235 - -
HCH13g1201 302 ProSiteProfiles PPC domain profile profile. 107 248 IPR005175 -
HCH13g1201 302 CDD DUF296 111 222 IPR005175 -
HCH13g1201 302 Gene3D - 110 240 - -
HCH13g1201 302 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 59 301 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0027 HCH-Chr12:178034 HCH13g1201 HCH-Chr13:39302289 7.40E-58 dispersed
HCH13g1201 HCH-Chr13:39302289 HCH7g1551 HCH-Chr7:47972397 6.30E-97 dispersed
HCH8g1127 HCH-Chr8:46973655 HCH13g1201 HCH-Chr13:39302289 2.00E-65 transposed
HCH11g1149 HCH-Chr11:43720186 HCH13g1201 HCH-Chr13:39302289 2.90E-20 wgd
HCH13g1201 HCH-Chr13:39302289 HCH7g1547 HCH-Chr7:47928116 1.10E-21 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1201 - - - 0.0