Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1213 ATGGCGTTAGAATTAGAGTGTTGGAAGGATCTGCAACCTTTGGGAGGAGATGGGGTTCTTTGGAGCTATGACTACGCCGATTTCGGAGAGAAAGTCTACGACGGCGCTGATATTTTCACGGCCAACTCATCAAATTCCAACAAAAAAATTTCCAATTCTTGTAATAAAGGGCTGATCTCCGGTGGAGGATCTTGTTCAATGGAGTCTCCGGCAGCCACAACAGGGAGGAGAAAGAGGCGGAGAACGAGGATCGTTAAGAACGGTGAAGAAATGGAGAATCAAAGAATGACCCACATAGCCATTGAACGCAATCGGAGGAAGCAAATGAACGAATATCTCGCAGTTCTACGATCCTTGATGCCGCCTTCTTATACCCAAAGGGGAGACCAAGCATCAATAGTAGGAGGCACAATAAACTTGGTGAAGGAGCTCGAACACCTTCTTCACTCTTTAGAGGCTGAAAAACAATCTCATCAGGCAACTGCCGGAACCCAATTTATCTTCTCCACCTTCATCTCCTCCTCTCATAATTCCGGCAACTCGGTTGCGGGGAATCGGTCGGTGGTGGTTAATGTGGAGGCGAAGGTGATGGAAGGCTTTGCAAATATCAACATAATGGCTGAAAACCAAAGGAAGCAGCTTCTGAAAGTTGTGGAGGAATTGCATTCTCTTCATCTTGTGATTCTTCACGTTAATGTCACAACTTTTCATCAAATGGTACTCTATTCTTTCTGCGTTAAGATTGAAGATGATTGTAAACTGAATACAGTGAATGGGATTACTGCAGCTGTGCATGAAATATTCAATAGGATCCATCCATAG 822 44.4 MALELECWKDLQPLGGDGVLWSYDYADFGEKVYDGADIFTANSSNSNKKISNSCNKGLISGGGSCSMESPAATTGRRKRRRTRIVKNGEEMENQRMTHIAIERNRRKQMNEYLAVLRSLMPPSYTQRGDQASIVGGTINLVKELEHLLHSLEAEKQSHQATAGTQFIFSTFISSSHNSGNSVAGNRSVVVNVEAKVMEGFANINIMAENQRKQLLKVVEELHSLHLVILHVNVTTFHQMVLYSFCVKIEDDCKLNTVNGITAAVHEIFNRIHP 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39583525 39587046 - evm.model.ptg000021l.1213 HCH13g1213 557718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1213 273 SMART finulus 99 150 IPR011598 GO:0046983(InterPro)
HCH13g1213 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 93 144 IPR011598 GO:0046983(InterPro)
HCH13g1213 273 Pfam Helix-loop-helix DNA-binding domain 94 145 IPR011598 GO:0046983(InterPro)
HCH13g1213 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 92 165 IPR036638 GO:0046983(InterPro)
HCH13g1213 273 PANTHER MAX DIMERIZATION, MAD 56 268 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH13g1213 273 Coils Coil 141 161 - -
HCH13g1213 273 Gene3D - 85 160 IPR036638 GO:0046983(InterPro)
HCH13g1213 273 CDD bHLH_AtFAMA_like 96 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1213 HCH-Chr13:39583525 HCH8g0136 HCH-Chr8:5460207 3.60E-43 dispersed
HCH13g1213 HCH-Chr13:39583525 HCH4g0243 HCH-Chr4:1468335 7.30E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32861 PF00010 HLH 6.80E-10 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1213 - - - 0.0