Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1220 ATGTTCCCTCTGCTTCTACTTCTCCTCCTCCTTCACTTTACTCCTTCTTCTCCCTCTCAACTCCTGCCCGATTATTACTCCAAAACCTGCCCGGACGCCCAGCTCATAGTTCGTAATGTGATGAAGAAATCTCTAATCAGAGAGCCTCGTAGCGTGGCTTCTGTCATGCGTTTCCAGTTTCACGATTGCTTCGTTAATGGTTGTGATGCGTCGATGTTGCTAGATGATACGCCGACTATGATTGGAGAAAAATTTGCTCTTTCAAATATAAATTCGCTGAGATCTTTCGAAGTTATTGATGAAGTGAAAGAAGCGTTAGAGAAAGCTTGCCCTGGAATTGTTTCTTGTGCTGATATTATAATTATGGCATCTAGAGATGCTGTTGCTTTGACAGGAGGACCCAATTGGGAGGTAAGATTGGGTCGTCTAGACAGCTTAATTGCTAGCCAAGAGGACTCGGACAACATCATGCCAAGTCCAAGAGCAAACGCAAGCCTCCTCATGGACCTATTTCACAAATTCAATCTCTCCACCAAAGACCTCATTTCGCTTTCCGGGTCTCACTCTATCGGCCAAGGCCGATGCTTCTCCATCATGTTTCGACTCTACAACCAATCCGGTACTGGCCAGGCTGACCCTACGATTGAACCCGGTTTCAGAGAAGATCTCTACAAGCTATGTCCGCAAGGTGGTGATGAAAATGTCACTGGAAACCTCGACTCGACACCGTATATTTTCGACAATCGGTACTTCAAGGACTTGGTGAGCGGGAGAGGGTTCTTGAATTCGGATCAAACGCTTTATTCGTTTCCGAAGACGAGAAAGTATGTTGAGATGTTTAGTAGAAATCAGAGAGAGTTTTTTAAGGCATTTGTGGAGGGAATGTTGAAGATGGGTGACTTGCAGTCTGGGCGGCCTGGGGAAATAAGGAGGAATTGTAGGGTAGTTAATAGCCAAACGGTGGACATATAA 972 45.37 MFPLLLLLLLLHFTPSSPSQLLPDYYSKTCPDAQLIVRNVMKKSLIREPRSVASVMRFQFHDCFVNGCDASMLLDDTPTMIGEKFALSNINSLRSFEVIDEVKEALEKACPGIVSCADIIIMASRDAVALTGGPNWEVRLGRLDSLIASQEDSDNIMPSPRANASLLMDLFHKFNLSTKDLISLSGSHSIGQGRCFSIMFRLYNQSGTGQADPTIEPGFREDLYKLCPQGGDENVTGNLDSTPYIFDNRYFKDLVSGRGFLNSDQTLYSFPKTRKYVEMFSRNQREFFKAFVEGMLKMGDLQSGRPGEIRRNCRVVNSQTVDI 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39707400 39710056 - evm.model.ptg000021l.1220 HCH13g1220 557725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1220 323 Gene3D Peroxidase, domain 2 158 298 - -
HCH13g1220 323 SUPERFAMILY Heme-dependent peroxidases 20 317 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1220 323 ProSiteProfiles Plant heme peroxidase family profile. 20 317 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1220 323 ProSitePatterns Peroxidases proximal heme-ligand signature. 180 190 IPR019793 -
HCH13g1220 323 PRINTS Plant peroxidase signature 94 107 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1220 323 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1220 323 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1220 323 PRINTS Plant peroxidase signature 30 49 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1220 323 PRINTS Plant peroxidase signature 113 123 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1220 323 PRINTS Plant peroxidase signature 54 74 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1220 323 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1220 323 PRINTS Plant peroxidase signature 132 147 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1220 323 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1220 323 FunFam Peroxidase 158 298 - -
HCH13g1220 323 PANTHER PEROXIDASE 72-RELATED 10 316 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1220 323 CDD secretory_peroxidase 20 316 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH13g1220 323 FunFam Peroxidase 24 165 - -
HCH13g1220 323 Pfam Peroxidase 37 283 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1220 323 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1220 323 PRINTS Haem peroxidase superfamily signature 52 66 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1220 323 PRINTS Haem peroxidase superfamily signature 114 131 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1220 323 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1220 323 PRINTS Haem peroxidase superfamily signature 132 144 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH13g1220 323 Gene3D - 24 317 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1220 HCH-Chr13:39707400 HCH7g0118 HCH-Chr7:769221 5.20E-73 dispersed
HCH13g1220 HCH-Chr13:39707400 HCH14g0610 HCH-Chr14:34853882 1.20E-74 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1220 K00430 - rcu:8273525 508.064