Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1226 ATGATGTTCGTTAAGATGAGAGAACTCTGTCTTGCGGCTCTAATACTGTCTTGCTTTCATTATTTGGCACTGTCTGATTTTCAAGGAAATGCACTCTTTGCATTGAAGACTGCATTGAATGCGACAGCAGATCAGCTGACAGATTGGAATCCAAATCAAGTGAATCCATGCACTTGGTCCAATGTTATATGTGATGGAAATAATGTGATTTCTGTATCATTGTCAACAATGGGATTTACGGGAACCTTGTCTCCAAAAATTGGAGGTCTAAAAACACTTTCAACTCTGATTTTGCAGGGAAATTACATTAGTGGAGAGATACCAAATGATTTTGGAAACCTAACCAATTTGGTCAGTTTGGATTTGGAAAATAACAGCCTAAGCGGTCAAATACCATCTTCTCTGGGTAACCTTAAGAAACTTCAGTTCCTATCTTTGAGTCAAAATCGTCTAACTGGGGCTATTCCGGAGTCACTCCCAAGTCTTCCTAGCTTGATCAGTCTTCTACTCGATTCAAATAATCTCAGCGGCCACATTCCTGAGCAGTTATTTCAAGTTCCAAAATACAATTTTTCTGGGAACAGGTTGAATTGTGGAACAAATACTCTTCATCCCTGCGCTTCTGATAGTACAAACTCAGGTGCTTCAAACAAGTCAAAGGTTGGCCTTATAGCGGGGATTATTGGTGGATTCACAATTGCTCTTCTTTTGGTTGGAGTATTGTTTTTCTTGTGCAAGGGTAGATATAAAGGCTACAGGCGTGAAGTGTTTGTAGACGTTGCAGGTGAAGTTGATCGAAGAATTGCATTCGGTCAGCTGAAAAGATTTGCATGGCGAGAACTACAGCTGGCTACAGACAGCTTCAGTGAGAAAAATGTTCTCGGACAAGGAGGATTTGGAAAGGTTTACAAAGGGGTACTTGCCGATGGCACCAAAGTTGCTGTAAAACGGTTGACAGATTATGAAAGCCCTGGGGGAGATGCTGCTTTCCAGCGTGAAGTTGAGATGATCAGTGTAGCTGTTCATAGAAATCTATTACGGCTGATTGGGTTTTGTACAACTCAGACAGAACGGCTTTTGGTGTATCCCTTTATGCAGAATTTGAGTGTTGCCTACCGTCTTCGAGAACTTAAGCCTGGGGATCCAGTTTTGGATTGGCCTACTCGTAAACGTGTGGCCTTGGGCACAGCTCGTGGTTTAGAGTACCTTCATGAACATTGCAATCCAAAGATTATTCATCGAGATGTTAAGGCTGCTAATGTATTGCTTGATGGAGATTTTGAAGCAGTTGTTGGCGATTTCGGCCTAGCAAAGTTGGTTGATGTTAGAAAAGCTAATGTCACTACTCAAGTACGGGGGACAATGGGCCACATAGCACCAGAGTACTTATCCACCGGAAAGTCATCAGAAAGGACTGATGTTTTTGGTTATGGCATAATGCTTCTAGAAATTGTTACGGGACAGCGTGCAATTGATTTCTCACGCTTAGAAGAAGAAGACGATGTTCTACTGCTTGACCATGTCAAGAAACTGGAAAGGGAGAAGCGGCTTGATGCTATCGTGGATCGAAACCTGATTAACTACAACATTCAAGAGGTAGAAATGATGATCCAAGTTGCATTGCTTTGCACGCAGCCGTGTTCAGATGACCGTCCAGCAATGTCACAGGTGGTACGGATGCTGGAAGGAGAGGGACTTGCAGAGAGATGGCAAGAATGGCAGCATTTGGAGGTGACTCGCCGACAAGAGTACGAGAGACTGCAGAGAAGATTTGATTGGGGTGAAGATTCCATTCATAGACAGGATGCTATTCAGTTATCTGGTGGAAGATAA 1833 42.88 MMFVKMRELCLAALILSCFHYLALSDFQGNALFALKTALNATADQLTDWNPNQVNPCTWSNVICDGNNVISVSLSTMGFTGTLSPKIGGLKTLSTLILQGNYISGEIPNDFGNLTNLVSLDLENNSLSGQIPSSLGNLKKLQFLSLSQNRLTGAIPESLPSLPSLISLLLDSNNLSGHIPEQLFQVPKYNFSGNRLNCGTNTLHPCASDSTNSGASNKSKVGLIAGIIGGFTIALLLVGVLFFLCKGRYKGYRREVFVDVAGEVDRRIAFGQLKRFAWRELQLATDSFSEKNVLGQGGFGKVYKGVLADGTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTQTERLLVYPFMQNLSVAYRLRELKPGDPVLDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDGDFEAVVGDFGLAKLVDVRKANVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLEIVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLDAIVDRNLINYNIQEVEMMIQVALLCTQPCSDDRPAMSQVVRMLEGEGLAERWQEWQHLEVTRRQEYERLQRRFDWGEDSIHRQDAIQLSGGR 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39824385 39833032 + evm.model.ptg000021l.1226 HCH13g1226 557731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1226 610 Gene3D Ribonuclease Inhibitor 26 208 IPR032675 -
HCH13g1226 610 Pfam Leucine rich repeat 116 175 IPR001611 GO:0005515(InterPro)
HCH13g1226 610 Gene3D Phosphorylase Kinase; domain 1 257 364 - -
HCH13g1226 610 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
HCH13g1226 610 Gene3D Transferase(Phosphotransferase) domain 1 365 581 - -
HCH13g1226 610 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 15 608 - -
HCH13g1226 610 Pfam Leucine Rich Repeat 93 114 IPR001611 GO:0005515(InterPro)
HCH13g1226 610 ProSiteProfiles Protein kinase domain profile. 288 566 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g1226 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g1226 610 SMART serkin_6 288 561 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g1226 610 FunFam Somatic embryogenesis receptor-like kinase 1 365 581 - -
HCH13g1226 610 FunFam Putative LRR receptor-like serine/threonine-protein kinase 25 208 - -
HCH13g1226 610 SMART LRR_typ_2 162 186 IPR003591 -
HCH13g1226 610 SMART LRR_typ_2 138 161 IPR003591 -
HCH13g1226 610 SMART LRR_typ_2 114 137 IPR003591 -
HCH13g1226 610 SUPERFAMILY L domain-like 30 198 - -
HCH13g1226 610 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524(InterPro)
HCH13g1226 610 SUPERFAMILY Protein kinase-like (PK-like) 268 562 IPR011009 -
HCH13g1226 610 Pfam Protein tyrosine and serine/threonine kinase 291 561 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g1226 610 FunFam Somatic embryogenesis receptor kinase 1 257 364 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1226 HCH-Chr13:39824385 HCH2g0315 HCH-Chr2:43103121 2.60E-174 dispersed
HCH13g1226 HCH-Chr13:39824385 HCH7g1539 HCH-Chr7:47882339 6.70E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81204 PF00069 Pkinase 6.80E-41 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1226 - - - 0.0