Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1248 ATGGTGGAATTTCACGATGAACTTTTTCCTGCTCCCAGCGATGGAGAAGATTATACAGAAGGAGAAGAAGAAGATATCAGCTTCAATGATCTCAAGAAACGAATGTGGAAAGATAAACAACGTTTGCAAAAGTTCAATGAAGAACGTGGAACTGAAGGTCCAGAGTCATCGTGTATGGCTAGAGAAGAAGCATCTCGTAGAAAGAAGATGGCAAGATCCCAAGATTCAATTCTCAAGTACATGGAGAAGATCATGGAAACTTGTAAGGCAAAAGGATTTGTATATGGGATTGTTCCTGAGAAGGGAAATAGTGTCATTGGAAGCTCTGAGAGTCTAAGAGAATGGTGGAAAGATAAAGTTAGATTCGAACAAAATGCTCCGGTTGCCATTGCCGAGTTCCTTCCAAAAGCCATAGAAGAAAGTGGGCTTGATGTTTCTTCGTTTTTCAATCTCCTCCATGATTTACAAGATACAACTTTAGGTTCTATCCTTTCTGCTCTGATGCAACACTGTGCTCCTCCACAAAGAAAATTCCCTCTCGAGAAGGGATTAGCGCCGCCGTGGTGGCCGAACGGGAAGGAGATTTGGTGGGGTGAGCAAGGAGGAGCAGAACATCATGATATTCCTCCTTATAAGAAACCTCATGACCTTAAAAAGGCTTGGAAGATAAGTGTTTTGTCCGCAGTCATTAAGCATATGTCTCCTGATTTAGACAGCATGAGAAAGCTCATTAGACAGTCTAAGAATTTACAAGCTAAAATGACAGCAAAGGAGACTTTAACTTGGTCCAAGGTAATGAACCAAGAAGAAGCTCTTATTAAACTTACAAAACACAGCCTTAGAATCTCCCCTGCAGAAGAAGATGGCTCCAGTACTGATATCGTAAACAACGAGAAAAGGAAGTGTGTGTTTGATCAAGGTCAAGATCATGAAGAAGCTGCATCTGAAAGTAGTATTCTATATGCATGCCAGAACCAATGGTGCCCACAGAGTGCGTTGTGTTTAGGCTTTCCTGATAAAAACTCAAGAGCAGAACATGAAACAATGTGTTTTCAGCAGAGCAATGAGTGTGAAGAAAATGAAGACGAAATCAATACAAAACTCAAAAGTGTGGTTGAATGGATGAATGCAGAGTTATCAAAGGCTGATCCTAACAGTAGTGATGATGCATGTGTAGAGGAAGGAGGAGACGGTTCTGGAAGTTGCTCAGTGGGAGACTATGCAAGTAGCTATTGGAAGGGCGGCTTTGGAGAACCAACAGTAGATGAAGCATTTGAGATTCATAGAGAGAGTATGGATTTGAATGGGAGTCCTGCACGTGATGCCAACCGCCATGAAGATGAAACTTCAATTTGGGATTGGAGATATGAATGGATTGAAAAATGA 1386 41.49 MVEFHDELFPAPSDGEDYTEGEEEDISFNDLKKRMWKDKQRLQKFNEERGTEGPESSCMAREEASRRKKMARSQDSILKYMEKIMETCKAKGFVYGIVPEKGNSVIGSSESLREWWKDKVRFEQNAPVAIAEFLPKAIEESGLDVSSFFNLLHDLQDTTLGSILSALMQHCAPPQRKFPLEKGLAPPWWPNGKEIWWGEQGGAEHHDIPPYKKPHDLKKAWKISVLSAVIKHMSPDLDSMRKLIRQSKNLQAKMTAKETLTWSKVMNQEEALIKLTKHSLRISPAEEDGSSTDIVNNEKRKCVFDQGQDHEEAASESSILYACQNQWCPQSALCLGFPDKNSRAEHETMCFQQSNECEENEDEINTKLKSVVEWMNAELSKADPNSSDDACVEEGGDGSGSCSVGDYASSYWKGGFGEPTVDEAFEIHRESMDLNGSPARDANRHEDETSIWDWRYEWIEK 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40237675 40239060 + evm.model.ptg000021l.1248 HCH13g1248 557753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1248 461 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 20 377 IPR006957 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(InterPro)
HCH13g1248 461 SUPERFAMILY DNA-binding domain of EIN3-like 150 273 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
HCH13g1248 461 MobiDBLite consensus disorder prediction 1 24 - -
HCH13g1248 461 FunFam Ethylene insensitive 3-like 1 144 280 - -
HCH13g1248 461 Pfam Ethylene insensitive 3, DNA-binding domain 29 270 IPR047091 GO:0003700(InterPro)
HCH13g1248 461 MobiDBLite consensus disorder prediction 44 66 - -
HCH13g1248 461 Gene3D - 143 279 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
HCH13g1248 461 Gene3D - 60 142 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1248 HCH-Chr13:40237675 HCH8g0502 HCH-Chr8:41736719 6.20E-80 dispersed
HCH13g1248 HCH-Chr13:40237675 HCH13g1249 HCH-Chr13:40247071 3.10E-220 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32864 PF04873 EIN3 3.10E-107 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1248 K14514 - csv:116406095 562.762