Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1248 ATGGTGGAATTTCACGATGAACTTTTTCCTGCTCCCAGCGATGGAGAAGATTATACAGAAGGAGAAGAAGAAGATATCAGCTTCAATGATCTCAAGAAACGAATGTGGAAAGATAAACAACGTTTGCAAAAGTTCAATGAAGAACGTGGAACTGAAGGTCCAGAGTCATCGTGTATGGCTAGAGAAGAAGCATCTCGTAGAAAGAAGATGGCAAGATCCCAAGATTCAATTCTCAAGTACATGGAGAAGATCATGGAAACTTGTAAGGCAAAAGGATTTGTATATGGGATTGTTCCTGAGAAGGGAAATAGTGTCATTGGAAGCTCTGAGAGTCTAAGAGAATGGTGGAAAGATAAAGTTAGATTCGAACAAAATGCTCCGGTTGCCATTGCCGAGTTCCTTCCAAAAGCCATAGAAGAAAGTGGGCTTGATGTTTCTTCGTTTTTCAATCTCCTCCATGATTTACAAGATACAACTTTAGGTTCTATCCTTTCTGCTCTGATGCAACACTGTGCTCCTCCACAAAGAAAATTCCCTCTCGAGAAGGGATTAGCGCCGCCGTGGTGGCCGAACGGGAAGGAGATTTGGTGGGGTGAGCAAGGAGGAGCAGAACATCATGATATTCCTCCTTATAAGAAACCTCATGACCTTAAAAAGGCTTGGAAGATAAGTGTTTTGTCCGCAGTCATTAAGCATATGTCTCCTGATTTAGACAGCATGAGAAAGCTCATTAGACAGTCTAAGAATTTACAAGCTAAAATGACAGCAAAGGAGACTTTAACTTGGTCCAAGGTAATGAACCAAGAAGAAGCTCTTATTAAACTTACAAAACACAGCCTTAGAATCTCCCCTGCAGAAGAAGATGGCTCCAGTACTGATATCGTAAACAACGAGAAAAGGAAGTGTGTGTTTGATCAAGGTCAAGATCATGAAGAAGCTGCATCTGAAAGTAGTATTCTATATGCATGCCAGAACCAATGGTGCCCACAGAGTGCGTTGTGTTTAGGCTTTCCTGATAAAAACTCAAGAGCAGAACATGAAACAATGTGTTTTCAGCAGAGCAATGAGTGTGAAGAAAATGAAGACGAAATCAATACAAAACTCAAAAGTGTGGTTGAATGGATGAATGCAGAGTTATCAAAGGCTGATCCTAACAGTAGTGATGATGCATGTGTAGAGGAAGGAGGAGACGGTTCTGGAAGTTGCTCAGTGGGAGACTATGCAAGTAGCTATTGGAAGGGCGGCTTTGGAGAACCAACAGTAGATGAAGCATTTGAGATTCATAGAGAGAGTATGGATTTGAATGGGAGTCCTGCACGTGATGCCAACCGCCATGAAGATGAAACTTCAATTTGGGATTGGAGATATGAATGGATTGAAAAATGA 1386 41.49 MVEFHDELFPAPSDGEDYTEGEEEDISFNDLKKRMWKDKQRLQKFNEERGTEGPESSCMAREEASRRKKMARSQDSILKYMEKIMETCKAKGFVYGIVPEKGNSVIGSSESLREWWKDKVRFEQNAPVAIAEFLPKAIEESGLDVSSFFNLLHDLQDTTLGSILSALMQHCAPPQRKFPLEKGLAPPWWPNGKEIWWGEQGGAEHHDIPPYKKPHDLKKAWKISVLSAVIKHMSPDLDSMRKLIRQSKNLQAKMTAKETLTWSKVMNQEEALIKLTKHSLRISPAEEDGSSTDIVNNEKRKCVFDQGQDHEEAASESSILYACQNQWCPQSALCLGFPDKNSRAEHETMCFQQSNECEENEDEINTKLKSVVEWMNAELSKADPNSSDDACVEEGGDGSGSCSVGDYASSYWKGGFGEPTVDEAFEIHRESMDLNGSPARDANRHEDETSIWDWRYEWIEK 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40237675 40239060 + evm.model.ptg000021l.1248 HCH13g1248 557753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1248 461 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 20 377 IPR006957 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(InterPro)
HCH13g1248 461 SUPERFAMILY DNA-binding domain of EIN3-like 150 273 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
HCH13g1248 461 MobiDBLite consensus disorder prediction 1 24 - -
HCH13g1248 461 FunFam Ethylene insensitive 3-like 1 144 280 - -
HCH13g1248 461 Pfam Ethylene insensitive 3, DNA-binding domain 29 270 IPR047091 GO:0003700(InterPro)
HCH13g1248 461 MobiDBLite consensus disorder prediction 44 66 - -
HCH13g1248 461 Gene3D - 143 279 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
HCH13g1248 461 Gene3D - 60 142 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1248 K14514 - - csv:116406095 562.762
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1248 HCH-Chr13:40237675 HCH8g0502 HCH-Chr8:41736719 6.20E-80 dispersed
HCH13g1248 HCH-Chr13:40237675 HCH13g1249 HCH-Chr13:40247071 3.10E-220 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g0502 . 1 628 EIL Transcription Factor Family AT2G27050 59.5 2.1e-194 675.6
HCH13g0289 . 1 523 EIL Transcription Factor Family AT2G27050 61.7 2.6e-171 599.0
HCH8g0463 . 46 326 EIL Transcription Factor Family AT2G27050 63.3 1.6e-96 350.5
HCH8g0463 . 46 576 EIL Transcription Factor Family AT1G73730 55.2 6.2e-151 531.2
HCH8g0502 . 33 333 EIL Transcription Factor Family AT1G73730 62.1 5.2e-105 378.6
HCH13g0289 . 40 335 EIL Transcription Factor Family AT1G73730 62.0 1.3e-103 374.0
HCH13g1248 . 23 291 EIL Transcription Factor Family AT1G73730 50.7 2.3e-73 273.5
HCH8g0502 . 2 628 EIL Transcription Factor Family AT3G20770 60.6 1.0e-210 729.9
HCH13g0289 . 7 610 EIL Transcription Factor Family AT3G20770 53.2 1.0e-170 597.0
HCH8g0463 . 46 292 EIL Transcription Factor Family AT3G20770 69.5 6.9e-98 355.1
HCH8g0463 . 83 288 EIL Transcription Factor Family AT5G65100 59.8 7.1e-70 261.9
HCH13g1249 . 1 405 EIL Transcription Factor Family AT5G10120 51.4 2.2e-104 376.3
HCH13g1248 . 22 372 EIL Transcription Factor Family AT5G10120 54.2 4.7e-99 358.6
HCH8g0463 . 46 290 EIL Transcription Factor Family AT5G10120 55.7 1.1e-71 267.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012054 0 1 0 0 0 1 2 2 1 1 1 1 2 1 1 2 1 0 2 1 1 2 0 0 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32864 PF04873 EIN3 3.10E-107 No_clan HCH TF