Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1249 ATGGTGGAATTTCTTGAAGAACTTCCTACTGCTCCCAGCGATGGAGAAGAAGAAGACATCAGCTATGATGAGCTCAAGAAACGAATGTGGAAAGATAAACGACGTTTGCAAAAGTTCGATGAAGAACGTGGAAGTGAAGAGCCAGAGTCATCGCGTGTGGCTAGAGAAGAAGCATCTCGTAGAAAGAAGATGGCAAGAGCTCAAGATTCAATTCTCAAGTACATGGAGAAGATCATGGAAGATTGTAAGGCAAAAGGATTTGTATATGGGATTGTTCCTGAGAAGGGAAATAGTGTCATTGGAAGCTCTGAGAGTCTACGAGAATGGTGGAAAGACACAGTTAGATTCGAACAAAATGCTCCGACTGCCATTGCCGAGTTCCTGCCAGAAGCCATAGAAGATGGTAGGCTCGATGTTTCTTCGTTTCTAAATCTTCTTCAAGATTTGCAGGATACAACTTTAGGTTCTATCCTTTCTGCTTTAATGCAACACTGTGCTCCTCCACAAAGAAAGTTCCCGCTGGACAAGGGTTTAGCGCCCCCGTGGTGGCCGAACGGGAAGGAGATTTGGTGGGGTGAGCAAGGAGCAGCAGAACAACATGGTATTCCTCCTTATAAGAAACCTCATGACCTTAAAAAGGCTTGGAAGGTAAGCGTTTTGTTAGCAGTCATTAAGCATATGTCTCCTGATTTAGACCGCATGAGAACGCTCATTAGACAGTCTAAGAATTTACAAGCTAAAATGACAGCAAGGGAGACTTTAACTTGGTACAAGGTAATGAACCAAGAAGAAGCTCTTATTAAACTTACAAAACACAGCCTTAGAATCTCCCCTGCAGAAGAAGATGGCTCCAGTACTGATATTGTGAACAAAGAGAAAAGAAAGGGTGTGTTTGATCAACATCAAGATCAAGAAGCTGCATCTGAAAGTAGTATTCTATATGCATGCCAGAACCAATGGTGCCCACAGAGTGAGTTCTGTTTAGATTTTCCTGATAAAAACTCAAGAGCAGAACATGAAACACTGTGTTTTCAGCCAAGCAATGAGAGGGAAGAAAATGAAGATGAAATCAATACACACCTCCAAAGTGTGGTTGAATGGATGAATGCAGAGTTATCAAAGGCTGATTGTAACAGTAGTGATGAAGCACGTGTAGAGGATGGAGGAGACGGTTCTGGAAGTAGCTCAGTGGGAAACTATGCAAGTTGCTATTGGACGGGTGGCATTGGAGAACCAACAGTAGATGAAGCATTTGAGATTCATAGAGAGAGTATGAAATTGAATGTGAATCCTGCATCTAATGCTTATCGCCATGAAGATGCAAGTTCAATTTGGGATTTGAGATATGAATGGACTGAAGAATGA 1365 42.2 MVEFLEELPTAPSDGEEEDISYDELKKRMWKDKRRLQKFDEERGSEEPESSRVAREEASRRKKMARAQDSILKYMEKIMEDCKAKGFVYGIVPEKGNSVIGSSESLREWWKDTVRFEQNAPTAIAEFLPEAIEDGRLDVSSFLNLLQDLQDTTLGSILSALMQHCAPPQRKFPLDKGLAPPWWPNGKEIWWGEQGAAEQHGIPPYKKPHDLKKAWKVSVLLAVIKHMSPDLDRMRTLIRQSKNLQAKMTARETLTWYKVMNQEEALIKLTKHSLRISPAEEDGSSTDIVNKEKRKGVFDQHQDQEAASESSILYACQNQWCPQSEFCLDFPDKNSRAEHETLCFQPSNEREENEDEINTHLQSVVEWMNAELSKADCNSSDEARVEDGGDGSGSSSVGNYASCYWTGGIGEPTVDEAFEIHRESMKLNVNPASNAYRHEDASSIWDLRYEWTEE 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40247071 40248435 + evm.model.ptg000021l.1249 HCH13g1249 557754

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1249 454 Gene3D - 53 129 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
HCH13g1249 454 Gene3D - 136 273 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
HCH13g1249 454 SUPERFAMILY DNA-binding domain of EIN3-like 144 267 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
HCH13g1249 454 MobiDBLite consensus disorder prediction 38 61 - -
HCH13g1249 454 FunFam Ethylene insensitive 3-like 1 138 274 - -
HCH13g1249 454 MobiDBLite consensus disorder prediction 1 20 - -
HCH13g1249 454 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 14 370 IPR006957 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(InterPro)
HCH13g1249 454 Coils Coil 22 42 - -
HCH13g1249 454 Pfam Ethylene insensitive 3, DNA-binding domain 23 264 IPR047091 GO:0003700(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1249 K14514 - - csv:116406094 533.487
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1249 HCH-Chr13:40247071 HCH8g0502 HCH-Chr8:41736719 8.50E-82 dispersed
HCH13g1248 HCH-Chr13:40237675 HCH13g1249 HCH-Chr13:40247071 3.10E-220 tandem
HCH13g1249 HCH-Chr13:40247071 HCH13g1250 HCH-Chr13:40262853 5.60E-65 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g0502 . 1 628 EIL Transcription Factor Family AT2G27050 59.5 2.1e-194 675.6
HCH13g0289 . 1 523 EIL Transcription Factor Family AT2G27050 61.7 2.6e-171 599.0
HCH8g0463 . 46 326 EIL Transcription Factor Family AT2G27050 63.3 1.6e-96 350.5
HCH8g0463 . 46 576 EIL Transcription Factor Family AT1G73730 55.2 6.2e-151 531.2
HCH8g0502 . 33 333 EIL Transcription Factor Family AT1G73730 62.1 5.2e-105 378.6
HCH13g0289 . 40 335 EIL Transcription Factor Family AT1G73730 62.0 1.3e-103 374.0
HCH13g1248 . 23 291 EIL Transcription Factor Family AT1G73730 50.7 2.3e-73 273.5
HCH8g0502 . 2 628 EIL Transcription Factor Family AT3G20770 60.6 1.0e-210 729.9
HCH13g0289 . 7 610 EIL Transcription Factor Family AT3G20770 53.2 1.0e-170 597.0
HCH8g0463 . 46 292 EIL Transcription Factor Family AT3G20770 69.5 6.9e-98 355.1
HCH8g0463 . 83 288 EIL Transcription Factor Family AT5G65100 59.8 7.1e-70 261.9
HCH13g1249 . 1 405 EIL Transcription Factor Family AT5G10120 51.4 2.2e-104 376.3
HCH13g1248 . 22 372 EIL Transcription Factor Family AT5G10120 54.2 4.7e-99 358.6
HCH8g0463 . 46 290 EIL Transcription Factor Family AT5G10120 55.7 1.1e-71 267.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012054 0 1 0 0 0 1 2 2 1 1 1 1 2 1 1 2 1 0 2 1 1 2 0 0 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32865 PF04873 EIN3 3.10E-106 No_clan HCH TF