Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1249 ATGGTGGAATTTCTTGAAGAACTTCCTACTGCTCCCAGCGATGGAGAAGAAGAAGACATCAGCTATGATGAGCTCAAGAAACGAATGTGGAAAGATAAACGACGTTTGCAAAAGTTCGATGAAGAACGTGGAAGTGAAGAGCCAGAGTCATCGCGTGTGGCTAGAGAAGAAGCATCTCGTAGAAAGAAGATGGCAAGAGCTCAAGATTCAATTCTCAAGTACATGGAGAAGATCATGGAAGATTGTAAGGCAAAAGGATTTGTATATGGGATTGTTCCTGAGAAGGGAAATAGTGTCATTGGAAGCTCTGAGAGTCTACGAGAATGGTGGAAAGACACAGTTAGATTCGAACAAAATGCTCCGACTGCCATTGCCGAGTTCCTGCCAGAAGCCATAGAAGATGGTAGGCTCGATGTTTCTTCGTTTCTAAATCTTCTTCAAGATTTGCAGGATACAACTTTAGGTTCTATCCTTTCTGCTTTAATGCAACACTGTGCTCCTCCACAAAGAAAGTTCCCGCTGGACAAGGGTTTAGCGCCCCCGTGGTGGCCGAACGGGAAGGAGATTTGGTGGGGTGAGCAAGGAGCAGCAGAACAACATGGTATTCCTCCTTATAAGAAACCTCATGACCTTAAAAAGGCTTGGAAGGTAAGCGTTTTGTTAGCAGTCATTAAGCATATGTCTCCTGATTTAGACCGCATGAGAACGCTCATTAGACAGTCTAAGAATTTACAAGCTAAAATGACAGCAAGGGAGACTTTAACTTGGTACAAGGTAATGAACCAAGAAGAAGCTCTTATTAAACTTACAAAACACAGCCTTAGAATCTCCCCTGCAGAAGAAGATGGCTCCAGTACTGATATTGTGAACAAAGAGAAAAGAAAGGGTGTGTTTGATCAACATCAAGATCAAGAAGCTGCATCTGAAAGTAGTATTCTATATGCATGCCAGAACCAATGGTGCCCACAGAGTGAGTTCTGTTTAGATTTTCCTGATAAAAACTCAAGAGCAGAACATGAAACACTGTGTTTTCAGCCAAGCAATGAGAGGGAAGAAAATGAAGATGAAATCAATACACACCTCCAAAGTGTGGTTGAATGGATGAATGCAGAGTTATCAAAGGCTGATTGTAACAGTAGTGATGAAGCACGTGTAGAGGATGGAGGAGACGGTTCTGGAAGTAGCTCAGTGGGAAACTATGCAAGTTGCTATTGGACGGGTGGCATTGGAGAACCAACAGTAGATGAAGCATTTGAGATTCATAGAGAGAGTATGAAATTGAATGTGAATCCTGCATCTAATGCTTATCGCCATGAAGATGCAAGTTCAATTTGGGATTTGAGATATGAATGGACTGAAGAATGA 1365 42.2 MVEFLEELPTAPSDGEEEDISYDELKKRMWKDKRRLQKFDEERGSEEPESSRVAREEASRRKKMARAQDSILKYMEKIMEDCKAKGFVYGIVPEKGNSVIGSSESLREWWKDTVRFEQNAPTAIAEFLPEAIEDGRLDVSSFLNLLQDLQDTTLGSILSALMQHCAPPQRKFPLDKGLAPPWWPNGKEIWWGEQGAAEQHGIPPYKKPHDLKKAWKVSVLLAVIKHMSPDLDRMRTLIRQSKNLQAKMTARETLTWYKVMNQEEALIKLTKHSLRISPAEEDGSSTDIVNKEKRKGVFDQHQDQEAASESSILYACQNQWCPQSEFCLDFPDKNSRAEHETLCFQPSNEREENEDEINTHLQSVVEWMNAELSKADCNSSDEARVEDGGDGSGSSSVGNYASCYWTGGIGEPTVDEAFEIHRESMKLNVNPASNAYRHEDASSIWDLRYEWTEE 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40247071 40248435 + evm.model.ptg000021l.1249 HCH13g1249 557754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1249 454 Gene3D - 53 129 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
HCH13g1249 454 Gene3D - 136 273 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
HCH13g1249 454 SUPERFAMILY DNA-binding domain of EIN3-like 144 267 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
HCH13g1249 454 MobiDBLite consensus disorder prediction 38 61 - -
HCH13g1249 454 FunFam Ethylene insensitive 3-like 1 138 274 - -
HCH13g1249 454 MobiDBLite consensus disorder prediction 1 20 - -
HCH13g1249 454 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 14 370 IPR006957 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(InterPro)
HCH13g1249 454 Coils Coil 22 42 - -
HCH13g1249 454 Pfam Ethylene insensitive 3, DNA-binding domain 23 264 IPR047091 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1249 HCH-Chr13:40247071 HCH8g0502 HCH-Chr8:41736719 8.50E-82 dispersed
HCH13g1248 HCH-Chr13:40237675 HCH13g1249 HCH-Chr13:40247071 3.10E-220 tandem
HCH13g1249 HCH-Chr13:40247071 HCH13g1250 HCH-Chr13:40262853 5.60E-65 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32865 PF04873 EIN3 3.10E-106 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1249 K14514 - csv:116406094 533.487