Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1260 ATGTCTGTCGCCAACGACGACACCGCTCCGCCACAGACGGAGCCCTCAACCGTCGAGAATTCGCATGTTCTCGACGTCGAAAAGATCGGTAGCAGTCCAGCTGATAGGACTCAATGGGTGGTGAATGGCCCTGAGCCTCCAGGTCCATGGAGGGAGTTCTTGGATTCCCTCAGAGACACCATTTTTCCTGATCCATCCAAGCTTATGTTCCTCAAGAACAAGACGGGACGGCTGCCGATTGCTTCACTATTGCAGACCTTATTTCCTATATTCTCTTGGGGCAGAAGCTACCATGCGAGGAAGTTCAAGAACGATGTATTGGCTGGCTTAACTCTTGCAAGTCTATGCATTCCTCAGAGTATTGGATATGCAACTTTGGCCAAGCTTGCTCCTCAATATGGCCTCTATACGAGCATTGTGCCTCCTCTTATTTATGCTGTGTTGGGGACTTCAAGGGAAATAGCGATCGGACCGGTGGCCATAGTTTCTTTGCTTCTGCCGTCGATGATCGATAAATTAGAAGATCCGGTGGCTGATCCTCTTGCTTATAGAAAGCTTGTGCTCACAGCAACTTTCTTTGCTGGAATCTTTCAAGCTGCCTTTGGACTCCTTCGGCTGGGATTTTTGGTGGACATGCTCTCTCATGCTGCTATAGTTGGGTTTATGGGTGGTGCTGCCATTGTGATTGGTCTTCAACAGCTGAAAGGACTTCTTGGCATCTCCCACTTCACAAACAAAACTGATATAATCTCTGTTATCAAAGCTGTTTTTGGATCCTTTCATCAAGATCCTTGGAATCCCTTTAACTTTATCCTTGGCTGCTCATTCCTGTGCTTTATCCTGATCACTAGATTCCTGGGGAAAAAGTATAAGAAGCTCTTTTGGTTGCCAGCCATTGCTCCTCTGATATCTGTTATTTTATCAACTCTCCTGGTCTTCCTTACAAGAGCAGATAACAATGGAATTAAGATAGTGAAACACATCCCAGGAGGCCTCAACCCAATCTCAGCTCATCAAATTCAACTCGGCGGCCCCCATGTCGGAGAAGTTGCCAAGATCGGTCTCATCGTTGCGATTGTAGCACTCACGGAAGCAATTGCAGTTGGCAGATCATTCGCTTCCATGAAAGGCTACCACATTGATGGAAACAGAGAGATGGTTGCTTTAGGCTTCATGAACATTGCTGGATCTCTCACTTCTTGTTATACTGCTACTGGTTCTTTTTCACGTTCAGCAGTAAATTTCAGCGCTGGATGTGAAACAGCAGTTTCAAACATAGTGATGGCTATTACAGTGATGATATCACTTGAGCTTTTTACAAAACTTCTCTATTTCACTCCAAATGCCATTCTTGCTTCTATAATTCTGTCAGCTCTTCCAGGCCTCATTGATTTGCATGAAGCTTATAATATATGGAAGATTGACAAACTTGACTTCTTGGCTTGCTTTGGAGCTTTCATTGGAGTCCTCTTTGTTTCTGTGGAAATGGGTCTCCTTCTTTCGATAGTAATATCATTTGCAAAGATAATACTGATATCAATCAGACCAGGGACTGAGATTATGGGAAAAGTCCCTGGAACTGATTCATTTCATGATATTGATCAATATCCAATGGCTGTCAAGACTCCTGGGGTCCTTATAATCCGTGTTAAATCTGGTTTGCTTTGTTTCGCCAATGCCAATTTCATCAGAGAAAGAATTATGAGGTTTATCACCAAAGAAGAAGAAGATACCTGCACAAAGAGGGGTTCTGATAGAGCCATTCATTTTGTAGTGATCGATCTGTCAAATTTAATGAATGTGGACACTTCAGGAGTTGCTGCTCTAATAGAACTGCAGAAAAGTTTGGCATCTCTTGGAATGGAGTTAGCAATTGCCAATCCAAAGTGGCAAGTGATACACAAGCTAAAGGTGGCAAACTTTGTTGCCAAGCTAAAAGGGAGGGTGTTCTTGACTGTTGGAGAAGCTGTGGAAGCATGCCTGTCATCTAAAATGGGAGCCATTTAA 2007 43.8 MSVANDDTAPPQTEPSTVENSHVLDVEKIGSSPADRTQWVVNGPEPPGPWREFLDSLRDTIFPDPSKLMFLKNKTGRLPIASLLQTLFPIFSWGRSYHARKFKNDVLAGLTLASLCIPQSIGYATLAKLAPQYGLYTSIVPPLIYAVLGTSREIAIGPVAIVSLLLPSMIDKLEDPVADPLAYRKLVLTATFFAGIFQAAFGLLRLGFLVDMLSHAAIVGFMGGAAIVIGLQQLKGLLGISHFTNKTDIISVIKAVFGSFHQDPWNPFNFILGCSFLCFILITRFLGKKYKKLFWLPAIAPLISVILSTLLVFLTRADNNGIKIVKHIPGGLNPISAHQIQLGGPHVGEVAKIGLIVAIVALTEAIAVGRSFASMKGYHIDGNREMVALGFMNIAGSLTSCYTATGSFSRSAVNFSAGCETAVSNIVMAITVMISLELFTKLLYFTPNAILASIILSALPGLIDLHEAYNIWKIDKLDFLACFGAFIGVLFVSVEMGLLLSIVISFAKIILISIRPGTEIMGKVPGTDSFHDIDQYPMAVKTPGVLIIRVKSGLLCFANANFIRERIMRFITKEEEDTCTKRGSDRAIHFVVIDLSNLMNVDTSGVAALIELQKSLASLGMELAIANPKWQVIHKLKVANFVAKLKGRVFLTVGEAVEACLSSKMGAI 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40494724 40502260 + evm.model.ptg000021l.1260 HCH13g1260 557765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1260 668 Gene3D STAS domain 515 663 IPR036513 -
HCH13g1260 668 NCBIfam sulfate permease 89 646 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH13g1260 668 Pfam STAS domain 536 656 IPR002645 -
HCH13g1260 668 SUPERFAMILY SpoIIaa-like 541 660 IPR036513 -
HCH13g1260 668 MobiDBLite consensus disorder prediction 1 38 - -
HCH13g1260 668 ProSiteProfiles STAS domain profile. 552 660 IPR002645 -
HCH13g1260 668 CDD STAS_SulP_like_sulfate_transporter 536 651 - -
HCH13g1260 668 FunFam Sulfate transporter 31 515 663 - -
HCH13g1260 668 ProSitePatterns SLC26A transporters signature. 131 152 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
HCH13g1260 668 MobiDBLite consensus disorder prediction 1 20 - -
HCH13g1260 668 Pfam Sulfate permease family 102 483 IPR011547 GO:0016020(InterPro)
HCH13g1260 668 PANTHER SULFATE TRANSPORTER 78 662 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1260 HCH-Chr13:40494724 HCH14g0099 HCH-Chr14:18977335 3.60E-206 dispersed
HCH13g1260 HCH-Chr13:40494724 HCH13g0076 HCH-Chr13:443930 3.90E-232 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1260 K17469 - csv:101213063 971.074