Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1262 ATGATGGGTCGAGTTAAGTTGCAGATAAAGAGGATTGAAAACAACACAAATCGTCAAGTAACCTTCTCCAAACGTAGAAATGGACTCATCAAAAAAGCTTATGAACTCTCCATTCTTTGCGATATCGATATCGCTCTTATTATGTTCTCTCCCTCCGGCCGCCTCGGACACTTCTCCGGCAGGCGAAGGATTGAAGATGTCTTGGCTCGTTACATAAATTTGCCTGATCATGATAGAGGATGCATTGTTCAAAATAAAGAGTTTTTACTAGGAACGCTAAGCAATCTCAAGACAGAGAACGACATAGCTTTACAACTTGCCAATCCTACGTCAAGCAATTCGAACGTTGAGGAGCTTCAACAAGAGATTGGTAATCTGAGGCATGAACTTCAGCTGGCAGAGCAGCAACTTAGGATATTTGAGCCCGACCCTCTATCCTTCACATCTAATGGAGAAATAGAGTCATGTGAGAAGAACCTTTTGGACACCTTAGCACGTGTCACTCAAAGGAAGAAAGATCTACTAAGTAGTCATTTATCTCCTTATGACCCTCCAAGTCATATTCAGATATATTTGGATTCGCAAGATGGGATTCCTTCGTCTTTCGATACCGACGTTGCTAATTGGTTGCCTGAAAATGGTCAAAACGCAACCCAAATTTGCGTTGCATCCGAATCATCTTCAATTCCTCAAAGTGGTCAATATCAAACAACAGTTTACGACCAAGGAACAAATATTAACGTTGGACATTGCAACATGGGTGGGTGTGACATTGGCAATCCAAACGACGACGGTTTATCTTCTTGGCACCATAACTACACCACTTCTCAGCTCCTCTCCTCCTTCATCCCTCAATCCTCTTTTGATTCTCTTAAGCAAGATATGGGAGGGCCTTGCATGTCGGCAATGCTGTCGCAGCAGCCAGTGGATACAATATCAAATTGCAACCAAATGCCACCTAGTGATGGAAGCACCAATTACGATGGCAAGCTGCCTCAGCTCAATGTGGACTGA 1014 43.2 MMGRVKLQIKRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLGHFSGRRRIEDVLARYINLPDHDRGCIVQNKEFLLGTLSNLKTENDIALQLANPTSSNSNVEELQQEIGNLRHELQLAEQQLRIFEPDPLSFTSNGEIESCEKNLLDTLARVTQRKKDLLSSHLSPYDPPSHIQIYLDSQDGIPSSFDTDVANWLPENGQNATQICVASESSSIPQSGQYQTTVYDQGTNINVGHCNMGGCDIGNPNDDGLSSWHHNYTTSQLLSSFIPQSSFDSLKQDMGGPCMSAMLSQQPVDTISNCNQMPPSDGSTNYDGKLPQLNVD 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40509985 40513836 - evm.model.ptg000021l.1262 HCH13g1262 557767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1262 337 Coils Coil 116 136 - -
HCH13g1262 337 Gene3D - 14 89 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1262 337 FunFam MADS-box transcription factor 41 14 92 - -
HCH13g1262 337 ProSiteProfiles MADS-box domain profile. 2 62 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1262 337 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1262 337 CDD MADS_MEF2_like 3 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH13g1262 337 SUPERFAMILY SRF-like 3 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1262 337 PRINTS MADS domain signature 39 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1262 337 PRINTS MADS domain signature 4 24 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1262 337 PRINTS MADS domain signature 24 39 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1262 337 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 228 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH13g1262 337 SMART madsneu2 2 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1262 337 MobiDBLite consensus disorder prediction 311 337 - -
HCH13g1262 337 ProSitePatterns MADS-box domain signature. 4 58 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1262 HCH-Chr13:40509985 HCH3g0068 HCH-Chr3:396940 1.50E-22 dispersed
HCH13g1262 HCH-Chr13:40509985 HCH3g0743 HCH-Chr3:5370503 1.30E-21 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32866 PF00319 SRF-TF 2.40E-25 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1262 - - - 0.0