Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH13g1262 | ATGATGGGTCGAGTTAAGTTGCAGATAAAGAGGATTGAAAACAACACAAATCGTCAAGTAACCTTCTCCAAACGTAGAAATGGACTCATCAAAAAAGCTTATGAACTCTCCATTCTTTGCGATATCGATATCGCTCTTATTATGTTCTCTCCCTCCGGCCGCCTCGGACACTTCTCCGGCAGGCGAAGGATTGAAGATGTCTTGGCTCGTTACATAAATTTGCCTGATCATGATAGAGGATGCATTGTTCAAAATAAAGAGTTTTTACTAGGAACGCTAAGCAATCTCAAGACAGAGAACGACATAGCTTTACAACTTGCCAATCCTACGTCAAGCAATTCGAACGTTGAGGAGCTTCAACAAGAGATTGGTAATCTGAGGCATGAACTTCAGCTGGCAGAGCAGCAACTTAGGATATTTGAGCCCGACCCTCTATCCTTCACATCTAATGGAGAAATAGAGTCATGTGAGAAGAACCTTTTGGACACCTTAGCACGTGTCACTCAAAGGAAGAAAGATCTACTAAGTAGTCATTTATCTCCTTATGACCCTCCAAGTCATATTCAGATATATTTGGATTCGCAAGATGGGATTCCTTCGTCTTTCGATACCGACGTTGCTAATTGGTTGCCTGAAAATGGTCAAAACGCAACCCAAATTTGCGTTGCATCCGAATCATCTTCAATTCCTCAAAGTGGTCAATATCAAACAACAGTTTACGACCAAGGAACAAATATTAACGTTGGACATTGCAACATGGGTGGGTGTGACATTGGCAATCCAAACGACGACGGTTTATCTTCTTGGCACCATAACTACACCACTTCTCAGCTCCTCTCCTCCTTCATCCCTCAATCCTCTTTTGATTCTCTTAAGCAAGATATGGGAGGGCCTTGCATGTCGGCAATGCTGTCGCAGCAGCCAGTGGATACAATATCAAATTGCAACCAAATGCCACCTAGTGATGGAAGCACCAATTACGATGGCAAGCTGCCTCAGCTCAATGTGGACTGA | 1014 | 43.2 | MMGRVKLQIKRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLGHFSGRRRIEDVLARYINLPDHDRGCIVQNKEFLLGTLSNLKTENDIALQLANPTSSNSNVEELQQEIGNLRHELQLAEQQLRIFEPDPLSFTSNGEIESCEKNLLDTLARVTQRKKDLLSSHLSPYDPPSHIQIYLDSQDGIPSSFDTDVANWLPENGQNATQICVASESSSIPQSGQYQTTVYDQGTNINVGHCNMGGCDIGNPNDDGLSSWHHNYTTSQLLSSFIPQSSFDSLKQDMGGPCMSAMLSQQPVDTISNCNQMPPSDGSTNYDGKLPQLNVD | 337 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 40509985 | 40513836 | - | evm.model.ptg000021l.1262 | HCH13g1262 | 557767 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH13g1262 | 337 | Coils | Coil | 116 | 136 | - | - | |
HCH13g1262 | 337 | Gene3D | - | 14 | 89 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH13g1262 | 337 | FunFam | MADS-box transcription factor 41 | 14 | 92 | - | - | |
HCH13g1262 | 337 | ProSiteProfiles | MADS-box domain profile. | 2 | 62 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH13g1262 | 337 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 11 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH13g1262 | 337 | CDD | MADS_MEF2_like | 3 | 76 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
HCH13g1262 | 337 | SUPERFAMILY | SRF-like | 3 | 81 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH13g1262 | 337 | PRINTS | MADS domain signature | 39 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH13g1262 | 337 | PRINTS | MADS domain signature | 4 | 24 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH13g1262 | 337 | PRINTS | MADS domain signature | 24 | 39 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH13g1262 | 337 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 2 | 228 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
HCH13g1262 | 337 | SMART | madsneu2 | 2 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH13g1262 | 337 | MobiDBLite | consensus disorder prediction | 311 | 337 | - | - | |
HCH13g1262 | 337 | ProSitePatterns | MADS-box domain signature. | 4 | 58 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH13g1262 | HCH-Chr13:40509985 | HCH3g0068 | HCH-Chr3:396940 | 1.50E-22 | dispersed | |
HCH13g1262 | HCH-Chr13:40509985 | HCH3g0743 | HCH-Chr3:5370503 | 1.30E-21 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32866 | PF00319 | SRF-TF | 2.40E-25 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH13g1262 | - | - | - | 0.0 |