Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1262 ATGATGGGTCGAGTTAAGTTGCAGATAAAGAGGATTGAAAACAACACAAATCGTCAAGTAACCTTCTCCAAACGTAGAAATGGACTCATCAAAAAAGCTTATGAACTCTCCATTCTTTGCGATATCGATATCGCTCTTATTATGTTCTCTCCCTCCGGCCGCCTCGGACACTTCTCCGGCAGGCGAAGGATTGAAGATGTCTTGGCTCGTTACATAAATTTGCCTGATCATGATAGAGGATGCATTGTTCAAAATAAAGAGTTTTTACTAGGAACGCTAAGCAATCTCAAGACAGAGAACGACATAGCTTTACAACTTGCCAATCCTACGTCAAGCAATTCGAACGTTGAGGAGCTTCAACAAGAGATTGGTAATCTGAGGCATGAACTTCAGCTGGCAGAGCAGCAACTTAGGATATTTGAGCCCGACCCTCTATCCTTCACATCTAATGGAGAAATAGAGTCATGTGAGAAGAACCTTTTGGACACCTTAGCACGTGTCACTCAAAGGAAGAAAGATCTACTAAGTAGTCATTTATCTCCTTATGACCCTCCAAGTCATATTCAGATATATTTGGATTCGCAAGATGGGATTCCTTCGTCTTTCGATACCGACGTTGCTAATTGGTTGCCTGAAAATGGTCAAAACGCAACCCAAATTTGCGTTGCATCCGAATCATCTTCAATTCCTCAAAGTGGTCAATATCAAACAACAGTTTACGACCAAGGAACAAATATTAACGTTGGACATTGCAACATGGGTGGGTGTGACATTGGCAATCCAAACGACGACGGTTTATCTTCTTGGCACCATAACTACACCACTTCTCAGCTCCTCTCCTCCTTCATCCCTCAATCCTCTTTTGATTCTCTTAAGCAAGATATGGGAGGGCCTTGCATGTCGGCAATGCTGTCGCAGCAGCCAGTGGATACAATATCAAATTGCAACCAAATGCCACCTAGTGATGGAAGCACCAATTACGATGGCAAGCTGCCTCAGCTCAATGTGGACTGA 1014 43.2 MMGRVKLQIKRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLGHFSGRRRIEDVLARYINLPDHDRGCIVQNKEFLLGTLSNLKTENDIALQLANPTSSNSNVEELQQEIGNLRHELQLAEQQLRIFEPDPLSFTSNGEIESCEKNLLDTLARVTQRKKDLLSSHLSPYDPPSHIQIYLDSQDGIPSSFDTDVANWLPENGQNATQICVASESSSIPQSGQYQTTVYDQGTNINVGHCNMGGCDIGNPNDDGLSSWHHNYTTSQLLSSFIPQSSFDSLKQDMGGPCMSAMLSQQPVDTISNCNQMPPSDGSTNYDGKLPQLNVD 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40509985 40513836 - evm.model.ptg000021l.1262 HCH13g1262 557767

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1262 337 Coils Coil 116 136 - -
HCH13g1262 337 Gene3D - 14 89 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1262 337 FunFam MADS-box transcription factor 41 14 92 - -
HCH13g1262 337 ProSiteProfiles MADS-box domain profile. 2 62 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1262 337 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1262 337 CDD MADS_MEF2_like 3 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH13g1262 337 SUPERFAMILY SRF-like 3 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1262 337 PRINTS MADS domain signature 39 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1262 337 PRINTS MADS domain signature 4 24 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1262 337 PRINTS MADS domain signature 24 39 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1262 337 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 228 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH13g1262 337 SMART madsneu2 2 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH13g1262 337 MobiDBLite consensus disorder prediction 311 337 - -
HCH13g1262 337 ProSitePatterns MADS-box domain signature. 4 58 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1262 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1262 HCH-Chr13:40509985 HCH3g0068 HCH-Chr3:396940 1.50E-22 dispersed
HCH13g1262 HCH-Chr13:40509985 HCH3g0743 HCH-Chr3:5370503 1.30E-21 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH3g0068 . 1 237 Type I MADS-box Gene Family AT2G03060 53.3 4.4e-63 238.8
HCH5g0698 . 1 148 Type I MADS-box Gene Family AT3G05860 54.7 6.0e-37 151.4
HCH8g0017 . 1 148 Type I MADS-box Gene Family AT3G05860 54.0 7.9e-37 151.0
HCH11g0934 . 4 159 Type I MADS-box Gene Family AT2G24840 53.5 1.3e-37 153.7
HCH11g0934 . 1 165 Type I MADS-box Gene Family AT5G60440 60.7 7.4e-50 194.5
HCH13g1262 . 2 284 Type I MADS-box Gene Family AT1G77980 50.7 1.0e-63 240.7
HCH13g1262 . 2 212 Type I MADS-box Gene Family AT1G77950 54.9 2.1e-53 206.1
HCH8g0017 . 1 156 Type I MADS-box Gene Family AT5G48670 71.3 1.2e-56 217.2
HCH5g0698 . 1 155 Type I MADS-box Gene Family AT5G48670 69.9 1.7e-55 213.4
HCH3g0991 . 1 174 Type I MADS-box Gene Family AT5G48670 61.1 1.3e-52 203.8
HCH3g0068 . 1 237 Type I MADS-box Gene Family AT2G03060 53.3 4.4e-63 238.8
HCH5g0698 . 1 148 Type I MADS-box Gene Family AT3G05860 54.7 6.0e-37 151.4
HCH8g0017 . 1 148 Type I MADS-box Gene Family AT3G05860 54.0 7.9e-37 151.0
HCH11g0934 . 4 159 Type I MADS-box Gene Family AT2G24840 53.5 1.3e-37 153.7
HCH11g0934 . 1 165 Type I MADS-box Gene Family AT5G60440 60.7 7.4e-50 194.5
HCH13g1262 . 2 284 Type I MADS-box Gene Family AT1G77980 50.7 1.0e-63 240.7
HCH13g1262 . 2 212 Type I MADS-box Gene Family AT1G77950 54.9 2.1e-53 206.1
HCH8g0017 . 1 156 Type I MADS-box Gene Family AT5G48670 71.3 1.2e-56 217.2
HCH5g0698 . 1 155 Type I MADS-box Gene Family AT5G48670 69.9 1.7e-55 213.4
HCH3g0991 . 1 174 Type I MADS-box Gene Family AT5G48670 61.1 1.3e-52 203.8
HCH3g0068 . 1 237 Type I MADS-box Gene Family AT2G03060 53.3 4.4e-63 238.8
HCH11g0934 . 1 165 Type I MADS-box Gene Family AT5G60440 60.7 7.4e-50 194.5
HCH8g0017 . 1 156 Type I MADS-box Gene Family AT5G48670 71.3 1.2e-56 217.2
HCH5g0698 . 1 155 Type I MADS-box Gene Family AT5G48670 69.9 1.7e-55 213.4
HCH3g0991 . 1 174 Type I MADS-box Gene Family AT5G48670 61.1 1.3e-52 203.8
HCH11g0934 . 4 159 Type I MADS-box Gene Family AT2G24840 53.5 1.3e-37 153.7
HCH13g1262 . 2 212 Type I MADS-box Gene Family AT1G77950 54.9 2.1e-53 206.1
HCH13g1262 . 2 284 Type I MADS-box Gene Family AT1G77980 50.7 1.0e-63 240.7
HCH5g0698 . 1 148 Type I MADS-box Gene Family AT3G05860 54.7 6.0e-37 151.4
HCH8g0017 . 1 148 Type I MADS-box Gene Family AT3G05860 54.0 7.9e-37 151.0
HCH3g0068 . 1 237 Type I MADS-box Gene Family AT2G03060 53.3 4.4e-63 238.8
HCH11g0934 . 1 165 Type I MADS-box Gene Family AT5G60440 60.7 7.4e-50 194.5
HCH8g0017 . 1 156 Type I MADS-box Gene Family AT5G48670 71.3 1.2e-56 217.2
HCH5g0698 . 1 155 Type I MADS-box Gene Family AT5G48670 69.9 1.7e-55 213.4
HCH3g0991 . 1 174 Type I MADS-box Gene Family AT5G48670 61.1 1.3e-52 203.8
HCH11g0934 . 4 159 Type I MADS-box Gene Family AT2G24840 53.5 1.3e-37 153.7
HCH13g1262 . 2 212 Type I MADS-box Gene Family AT1G77950 54.9 2.1e-53 206.1
HCH13g1262 . 2 284 Type I MADS-box Gene Family AT1G77980 50.7 1.0e-63 240.7
HCH5g0698 . 1 148 Type I MADS-box Gene Family AT3G05860 54.7 6.0e-37 151.4
HCH8g0017 . 1 148 Type I MADS-box Gene Family AT3G05860 54.0 7.9e-37 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008266 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32866 PF00319 SRF-TF 2.40E-25 No_clan HCH TF