Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH13g1272 | ATGAACTCATCATCCACTAAATTTTACAATCCAGGAAGGATGGGATTGTACGAACCCATCCACCAGATTGGAATGTGGGGAGAAACCTTCAGAAACCATCCCAATTTAAATTCATCGCCATCTCTCATTATGGACCCAGACACCAAGCTTGAAATTCAGTCAGATGATGCTTCCATTGGATCACTCGGAGAAACTAATGCGTATGATCAAGAAGATACCAGACCTATTGATAAGATTCAAAGACGACTTGCACAAAATCGAGAGGCGGCTCGAAAAAGTCGCCTTAGAAAAAAGGCTTACATTAAGCAATTGGAAACAAGTCGCTTAAAACTTATTCAAATAGAACAAGAGCTTGAGAAAGCAAGACAACAGGGACGTCTATTTGGTGGCTCTAGATGTGATAATAACCAGTTGGGTTTCTCTGGAACCACAAATTCAGGCATCACTGCATTTGAATCAGAGTACGAGCACTGGGTCGAAGAGCAGAATCGACAAATTTGCGATTTGAGAGCCGCCATGCATGCTGATATTACTGATATCGAGCTTCGTATACTAGTCGAAAACTCGATGCGGCACTACTTTAAATTTTTTCGAATGAAAGCTAGAGCTGCGAAAGCAGACGTCTCTTATATAATGTCAGGCATGTGGAAATCATCAGCTGAAAGACTTTTCTTATGGATTGGAGGATTTCGCCCTTCAGAACTCCTTAAGGTTCTCATACCTCACCTGGATACATTGACTGATCAACAAATTTCAGAAACTGGTAGCCTTAGAAAATCTTGTCTTCAAGCAGAAGATGCTCTAAGACAAGGTATGGAAAAACTCCAGCAAAATCTATTCGAAAGCGTCGTGGCGGGTCAGTTGGGTGAAGGAAGCTATCCCTTACAGATGACTGCTGCAATGGAGAGATTAGAAGCACTCATTTGCTTTGTGAATCAGGCTGACCATCTACGACAGGAAACATTGCAACAGATGTATAAAATTCTAACAACCCGGCAATCTGCTCATGGCCTTCTTACTTTAGGCGAGTTCTTCCAACGACTCCGAGCATTGAGCTCGCTTTGGTCGAACCGTCCTTGCGAGCCTGCGTAG | 1092 | 42.86 | MNSSSTKFYNPGRMGLYEPIHQIGMWGETFRNHPNLNSSPSLIMDPDTKLEIQSDDASIGSLGETNAYDQEDTRPIDKIQRRLAQNREAARKSRLRKKAYIKQLETSRLKLIQIEQELEKARQQGRLFGGSRCDNNQLGFSGTTNSGITAFESEYEHWVEEQNRQICDLRAAMHADITDIELRILVENSMRHYFKFFRMKARAAKADVSYIMSGMWKSSAERLFLWIGGFRPSELLKVLIPHLDTLTDQQISETGSLRKSCLQAEDALRQGMEKLQQNLFESVVAGQLGEGSYPLQMTAAMERLEALICFVNQADHLRQETLQQMYKILTTRQSAHGLLTLGEFFQRLRALSSLWSNRPCEPA | 363 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 40631032 | 40636266 | + | evm.model.ptg000021l.1272 | HCH13g1272 | 557777 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH13g1272 | 363 | SMART | brlzneu | 74 | 137 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH13g1272 | 363 | Pfam | bZIP transcription factor | 78 | 107 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH13g1272 | 363 | Coils | Coil | 104 | 124 | - | - | |
HCH13g1272 | 363 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 2 | 362 | - | - | |
HCH13g1272 | 363 | Gene3D | - | 77 | 127 | - | - | |
HCH13g1272 | 363 | ProSiteProfiles | DOG1 domain profile. | 148 | 358 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
HCH13g1272 | 363 | Pfam | Seed dormancy control | 165 | 240 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
HCH13g1272 | 363 | SUPERFAMILY | Leucine zipper domain | 79 | 121 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH13g1272 | 363 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 81 | 96 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH13g1272 | 363 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 76 | 120 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH13g1272 | 363 | FunFam | BZIP family transcription factor | 77 | 126 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH13g1272 | HCH-Chr13:40631032 | HCH9g1309 | HCH-Chr9:41872209 | 1.10E-74 | dispersed | |
HCH13g0060 | HCH-Chr13:354454 | HCH13g1272 | HCH-Chr13:40631032 | 6.70E-101 | transposed | |
HCH13g1272 | HCH-Chr13:40631032 | HCH4g0180 | HCH-Chr4:1035219 | 1.90E-76 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32867 | PF14144 | DOG1 | 3.10E-28 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH13g1272 | K14431 | - | csv:101208419 | 625.165 |