Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1272 ATGAACTCATCATCCACTAAATTTTACAATCCAGGAAGGATGGGATTGTACGAACCCATCCACCAGATTGGAATGTGGGGAGAAACCTTCAGAAACCATCCCAATTTAAATTCATCGCCATCTCTCATTATGGACCCAGACACCAAGCTTGAAATTCAGTCAGATGATGCTTCCATTGGATCACTCGGAGAAACTAATGCGTATGATCAAGAAGATACCAGACCTATTGATAAGATTCAAAGACGACTTGCACAAAATCGAGAGGCGGCTCGAAAAAGTCGCCTTAGAAAAAAGGCTTACATTAAGCAATTGGAAACAAGTCGCTTAAAACTTATTCAAATAGAACAAGAGCTTGAGAAAGCAAGACAACAGGGACGTCTATTTGGTGGCTCTAGATGTGATAATAACCAGTTGGGTTTCTCTGGAACCACAAATTCAGGCATCACTGCATTTGAATCAGAGTACGAGCACTGGGTCGAAGAGCAGAATCGACAAATTTGCGATTTGAGAGCCGCCATGCATGCTGATATTACTGATATCGAGCTTCGTATACTAGTCGAAAACTCGATGCGGCACTACTTTAAATTTTTTCGAATGAAAGCTAGAGCTGCGAAAGCAGACGTCTCTTATATAATGTCAGGCATGTGGAAATCATCAGCTGAAAGACTTTTCTTATGGATTGGAGGATTTCGCCCTTCAGAACTCCTTAAGGTTCTCATACCTCACCTGGATACATTGACTGATCAACAAATTTCAGAAACTGGTAGCCTTAGAAAATCTTGTCTTCAAGCAGAAGATGCTCTAAGACAAGGTATGGAAAAACTCCAGCAAAATCTATTCGAAAGCGTCGTGGCGGGTCAGTTGGGTGAAGGAAGCTATCCCTTACAGATGACTGCTGCAATGGAGAGATTAGAAGCACTCATTTGCTTTGTGAATCAGGCTGACCATCTACGACAGGAAACATTGCAACAGATGTATAAAATTCTAACAACCCGGCAATCTGCTCATGGCCTTCTTACTTTAGGCGAGTTCTTCCAACGACTCCGAGCATTGAGCTCGCTTTGGTCGAACCGTCCTTGCGAGCCTGCGTAG 1092 42.86 MNSSSTKFYNPGRMGLYEPIHQIGMWGETFRNHPNLNSSPSLIMDPDTKLEIQSDDASIGSLGETNAYDQEDTRPIDKIQRRLAQNREAARKSRLRKKAYIKQLETSRLKLIQIEQELEKARQQGRLFGGSRCDNNQLGFSGTTNSGITAFESEYEHWVEEQNRQICDLRAAMHADITDIELRILVENSMRHYFKFFRMKARAAKADVSYIMSGMWKSSAERLFLWIGGFRPSELLKVLIPHLDTLTDQQISETGSLRKSCLQAEDALRQGMEKLQQNLFESVVAGQLGEGSYPLQMTAAMERLEALICFVNQADHLRQETLQQMYKILTTRQSAHGLLTLGEFFQRLRALSSLWSNRPCEPA 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40631032 40636266 + evm.model.ptg000021l.1272 HCH13g1272 557777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1272 363 SMART brlzneu 74 137 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH13g1272 363 Pfam bZIP transcription factor 78 107 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH13g1272 363 Coils Coil 104 124 - -
HCH13g1272 363 PANTHER TRANSCRIPTION FACTOR TGA9 2 362 - -
HCH13g1272 363 Gene3D - 77 127 - -
HCH13g1272 363 ProSiteProfiles DOG1 domain profile. 148 358 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
HCH13g1272 363 Pfam Seed dormancy control 165 240 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
HCH13g1272 363 SUPERFAMILY Leucine zipper domain 79 121 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH13g1272 363 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH13g1272 363 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 120 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH13g1272 363 FunFam BZIP family transcription factor 77 126 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1272 HCH-Chr13:40631032 HCH9g1309 HCH-Chr9:41872209 1.10E-74 dispersed
HCH13g0060 HCH-Chr13:354454 HCH13g1272 HCH-Chr13:40631032 6.70E-101 transposed
HCH13g1272 HCH-Chr13:40631032 HCH4g0180 HCH-Chr4:1035219 1.90E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32867 PF14144 DOG1 3.10E-28 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1272 K14431 - csv:101208419 625.165