Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1275 ATGAAGAGATTATATGGAGCTTTGGTTTTAATATGGTTGGTTTTGATTGCTCCCAATGCCTCTGCCACTGAAGAAGCTGATGCGTTGCATAGTTTTCGGTTCAATTTAGAAGATCCTAACAATGTTCTTCAGAGTTGGGATCCCACCCTTGTTAATCCCTGCACTTGGTTTCATGTCTCATGCAACAATGAGAATAATATCATTAGAGTGGATCTTGGAAATGCTGGATTGTCTGGTAAATTGGTACCACAACTTGGTCTACTTAAGAATTTGCAGTATTTGGAACTTTATGGTAACAATTTAAGTGGAGAGATTCCAAATGATATTGGGAATCTGGAAAATTTGGTGAGCTTAGATCTTTACTTGAACAGTTTAACTGGGCCTATTCCAGACAAGTTGGGCAAGCTCGCACAATTGCGTTTCCTGCGGCTCAACAACAATAACTTATCTGGAACAATACCTTTGTCCTTGACAAATATTTCCTCCCTGCAAGTTTTGGATCTATCAAACAACTTTTTATCTGGAGAGGTTCCAAATAATGGCTCGTTTTCACTATTTACTCCCATCAGTTTTGCAAATAACTTGAATCTATGTGGTCTGGTAACTGGGAAACCCTGCCCTGGGGCACCTCCTTTCTCTCCACCGCCTCCGTTCGTTCCACCGTCGACATTTTCTTCCCACGAGATAAACAATCCCAATGGAGCAATTGTTGGAGGAGTAGCTGCTGGTGCTGCATTACTTTTTGCAACTCCAGCAATTTTGTTTGCTTATTGGCAGAGAAGGAAATCACAAGAACAATTCTTTGATGTCCCTGCTGAAGAAGATTCAGAAATCAACTTTGGACAGCTGAAAAGGTTTCCTTTGAGAGATTTACAAGTTGCAACTGATAACTTTTGCAACAAAAATATTCTAGGCCGAGGTGGATTTGGTAAAGTGTACAAGGGACGCCTAGCTGATGGCTCGTTGGTAGCAGTAAAAAGGCTCAAAGAAGAGCGTACACCGGGTGGAGAGTTGCAGTTTCAAACAGAGGTTGAAATGATTAGCATGGCTGTTCATCGAAACCTTCTGCGATTACACGGATTTTGCACGACCGCAACTGAACGTCTACTTGTTTATCCCTATATGGCCAATGGAAGTGTTGCATCATGTTTAAGAGAGCGTCCGCAATCTAAAGATCCTCTTGATTGGCCAACCAGGAAGAAAGTTGCATTAGGCTCTGCAAGAGGTCTTTCTTATTTACATGATGGTTGTGATCCGAAAATCATTCATCGTGATGTCAAAGCCGCAAACATTTTACTCGATGAGGAGTTTGAGGCCATCGTTGGAGACTTCGGTCTAGCAAAACTAATGGACTACAAGGACACCCACGTTACAACAGCGGTAAGGGGTACGATTGGGCATATAGCTCCAGAGTATCTCTCCACTGGGAAGTCATCAGAAAAAACAGATGTTTTTGGTTATGGAATTATGCTCTTGGAGCTTATAACCGGACAGAGGGCTTTCGATCTTGCTCGGCTAGCAAACGATGAAGATGTTATGCTCCTTGATTGGGTGAAAAGCCTTCTGAAAGAGAAAAAGCTGGAGATGTTAGTTGACCCTGATCTGAAGAACAATTATGATGAAACTGAAGTTGAGCAAATAATCCAAGTAGCTCTTCTCTGCACTCAAAGCTCACCGATGGAAAGGCCCAAGATGTCGGAGGTAATTAGAATGCTCGAAGGCGATGGCTTAACCGAGCGATGGGAGGAATGGCAGAGAGTCGAGGTCGTCTACCATGAAATCGAGTTGGCATCATCTCAAACTTCTGAATGGATGGTTGATTCCACTGAAAACATCCATGCTTTTGAATTATCTGGTCCTAGATAG 1866 42.55 MKRLYGALVLIWLVLIAPNASATEEADALHSFRFNLEDPNNVLQSWDPTLVNPCTWFHVSCNNENNIIRVDLGNAGLSGKLVPQLGLLKNLQYLELYGNNLSGEIPNDIGNLENLVSLDLYLNSLTGPIPDKLGKLAQLRFLRLNNNNLSGTIPLSLTNISSLQVLDLSNNFLSGEVPNNGSFSLFTPISFANNLNLCGLVTGKPCPGAPPFSPPPPFVPPSTFSSHEINNPNGAIVGGVAAGAALLFATPAILFAYWQRRKSQEQFFDVPAEEDSEINFGQLKRFPLRDLQVATDNFCNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLHGFCTTATERLLVYPYMANGSVASCLRERPQSKDPLDWPTRKKVALGSARGLSYLHDGCDPKIIHRDVKAANILLDEEFEAIVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDEDVMLLDWVKSLLKEKKLEMLVDPDLKNNYDETEVEQIIQVALLCTQSSPMERPKMSEVIRMLEGDGLTERWEEWQRVEVVYHEIELASSQTSEWMVDSTENIHAFELSGPR 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40656402 40661111 - evm.model.ptg000021l.1275 HCH13g1275 557780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1275 621 FunFam Somatic embryogenesis receptor-like kinase 1 375 592 - -
HCH13g1275 621 ProSiteProfiles Protein kinase domain profile. 298 585 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g1275 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g1275 621 Pfam Leucine Rich Repeat 162 180 IPR001611 GO:0005515(InterPro)
HCH13g1275 621 Pfam Leucine Rich Repeat 114 136 IPR001611 GO:0005515(InterPro)
HCH13g1275 621 Pfam Leucine Rich Repeat 138 159 IPR001611 GO:0005515(InterPro)
HCH13g1275 621 Pfam Leucine Rich Repeat 90 112 IPR001611 GO:0005515(InterPro)
HCH13g1275 621 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524(InterPro)
HCH13g1275 621 Gene3D Phosphorylase Kinase; domain 1 267 374 - -
HCH13g1275 621 SUPERFAMILY Protein kinase-like (PK-like) 278 573 IPR011009 -
HCH13g1275 621 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 621 - -
HCH13g1275 621 Gene3D Transferase(Phosphotransferase) domain 1 375 592 - -
HCH13g1275 621 SMART serkin_6 298 572 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g1275 621 Gene3D Ribonuclease Inhibitor 22 207 IPR032675 -
HCH13g1275 621 FunFam Somatic embryogenesis receptor kinase 1 21 208 - -
HCH13g1275 621 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
HCH13g1275 621 FunFam Somatic embryogenesis receptor kinase 1 267 374 - -
HCH13g1275 621 Pfam Protein tyrosine and serine/threonine kinase 301 572 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g1275 621 SUPERFAMILY L domain-like 24 196 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0110 HCH-Chr10:951043 HCH13g1275 HCH-Chr13:40656402 1.30E-30 dispersed
HCH11g0997 HCH-Chr11:41508381 HCH13g1275 HCH-Chr13:40656402 9.40E-201 dispersed
HCH13g1275 HCH-Chr13:40656402 HCH4g0034 HCH-Chr4:212341 6.70E-138 dispersed
HCH9g0846 HCH-Chr9:5984425 HCH13g1275 HCH-Chr13:40656402 7.30E-47 dispersed
HCH13g1275 HCH-Chr13:40656402 HCH12g1482 HCH-Chr12:40406051 4.20E-249 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81205 PF07714 PK_Tyr_Ser-Thr 3.50E-44 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1275 K13418 - csv:101208905 1026.54