Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1276 ATGACTAGCAAAAAAAACCAAACAAGTCCTGTCGGAAGTCCAACTTCCGGCAACATCTCCGACAGCTCTACAAAAGAACAAGACCGTTTCTTACCAATCGCTAACGTTAGTCGTATCATGAAAAAATCTCTTCCAGCAAACGCTAAGATCTCCAAAGAAGCTAAAGAAACTGTTCAAGAATGTGTCTCGGAGTTTATTAGCTTCATCACCGGCGAAGCTTCCGATAAGTGTCAAAGAGAAAAGAGGAAAACGATCAACGGCGATGATCTTTTATGGGCGATGACAACTTTGGGGTTTGAGAATTACGTTGGTCCTTTGAAAGTTTATCTTAATAAATATAGAGAAACGGAAGAGGAAAAACATTCGGTTGTTGTTGTTAGACAAGAAGATAATCAGCCTTTGTCTCCGGTTCCGGCGAAAGGGGGTTTTTCAAGTTCCGGAGTTGATGATCCGATTGGAAAATCTAGTAATTCTGTGATGGATTTTCAGAATCTGAATAATGGGTTTTATTCTTTAGGGAGTCATCAACAAACCCAAAAGAGCTTTAACGTTATTGATGGAGGGGTTGGATTTGGTGAAGGTTTGATGGTGAGAGGTTTTAATGTTAACGGTGTTTATGAAAATGGAGATGGAAGTCGAGGTAGAGCTTTGGCGGCTCATCTTCATCAGGGTTCTGGTTGGTAA 684 40.64 MTSKKNQTSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLNKYRETEEEKHSVVVVRQEDNQPLSPVPAKGGFSSSGVDDPIGKSSNSVMDFQNLNNGFYSLGSHQQTQKSFNVIDGGVGFGEGLMVRGFNVNGVYENGDGSRGRALAAHLHQGSGW 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40675745 40676428 + evm.model.ptg000021l.1276 HCH13g1276 557781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1276 227 MobiDBLite consensus disorder prediction 1 27 - -
HCH13g1276 227 SUPERFAMILY Histone-fold 27 124 IPR009072 GO:0046982(InterPro)
HCH13g1276 227 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
HCH13g1276 227 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH13g1276 227 Gene3D Histone, subunit A 17 134 IPR009072 GO:0046982(InterPro)
HCH13g1276 227 FunFam Nuclear transcription factor Y subunit B-3 19 138 - -
HCH13g1276 227 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
HCH13g1276 227 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
HCH13g1276 227 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
HCH13g1276 227 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 156 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1276 HCH-Chr13:40675745 HCH6g0875 HCH-Chr6:43600627 3.10E-40 dispersed
HCH13g1276 HCH-Chr13:40675745 HCH2g0653 HCH-Chr2:50302037 6.40E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32869 PF00808 CBFD_NFYB_HMF 6.80E-27 CL0012 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1276 K08065 - csv:116406241 328.946