Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH13g1279 | ATGAATGATCAAGCTGAAGATCATCATGAAGCAGTACTCATCTCTCAGTTGTACTCTGGATTATACACCCAAATCCTGCCCCAACAAGGTGAGCAAAAAGTGAGGCGGCGACGGCGGAAGAAGAACAAGGGAAGTGGGGAGGGTGGAATGGTTGGGATGAAGAAGAGGAAGCTAAGTGAAGAGCAAGTTCATCTTTTGGAGACAAACTTTGGGAGTGAACATAAATTGGAGTCTGAAAGGAAGGACCGTTTGGCATCTGAATTGGGTCTTGATCCTCGTCAAGTTGCTGTTTGGTTTCAAAACCGCCGTGCTCGTTGGAAGAACAAGAAGCTTGAGGAAGAATACTCTAATTTGAAGAAGCTTCATGAATCTGTTATCATTGAAAAATGTCACCTTGAAACCGAGATTCTGAAGCTGAAAGACCAACTTTCAGAAGCAGAGAAGGAGAAAGAGAGGTTGATAATGGCAGAACGGGCCGAAAGGCCTTTAAGCCAAAGCCCAAGCCCATCACTCTCAATGGATCAAACTTGCTTTGGGGAATTTGGAGCTTATGAAGATGTATTTTACATGGGAGAAAACACTTACATTTATGACATGGAATGGATTAATCCCTACATTTGA | 621 | 43.16 | MNDQAEDHHEAVLISQLYSGLYTQILPQQGEQKVRRRRRKKNKGSGEGGMVGMKKRKLSEEQVHLLETNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKLHESVIIEKCHLETEILKLKDQLSEAEKEKERLIMAERAERPLSQSPSPSLSMDQTCFGEFGAYEDVFYMGENTYIYDMEWINPYI | 206 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 40746873 | 40748345 | + | evm.model.ptg000021l.1279 | HCH13g1279 | 557784 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH13g1279 | 206 | FunFam | homeobox-leucine zipper protein ATHB-40 | 48 | 117 | - | - | |
HCH13g1279 | 206 | CDD | homeodomain | 54 | 110 | IPR001356 | GO:0003677(InterPro) | |
HCH13g1279 | 206 | Gene3D | - | 50 | 117 | - | - | |
HCH13g1279 | 206 | Coils | Coil | 101 | 128 | - | - | |
HCH13g1279 | 206 | PRINTS | Lambda-repressor HTH signature | 89 | 105 | IPR000047 | GO:0003677(InterPro) | |
HCH13g1279 | 206 | PRINTS | Lambda-repressor HTH signature | 80 | 89 | IPR000047 | GO:0003677(InterPro) | |
HCH13g1279 | 206 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 35 | 156 | IPR045224 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER) | |
HCH13g1279 | 206 | SMART | HOX_1 | 52 | 113 | IPR001356 | GO:0003677(InterPro) | |
HCH13g1279 | 206 | SUPERFAMILY | Homeodomain-like | 54 | 117 | IPR009057 | - | |
HCH13g1279 | 206 | ProSitePatterns | 'Homeobox' domain signature. | 84 | 107 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
HCH13g1279 | 206 | MobiDBLite | consensus disorder prediction | 29 | 52 | - | - | |
HCH13g1279 | 206 | Pfam | Homeodomain | 55 | 108 | IPR001356 | GO:0003677(InterPro) | |
HCH13g1279 | 206 | ProSiteProfiles | 'Homeobox' domain profile. | 49 | 109 | IPR001356 | GO:0003677(InterPro) | |
HCH13g1279 | 206 | Coils | Coil | 136 | 159 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH13g1279 | HCH-Chr13:40746873 | HCH14g0550 | HCH-Chr14:34466696 | 4.30E-49 | dispersed | |
HCH13g1279 | HCH-Chr13:40746873 | HCH3g0280 | HCH-Chr3:1777841 | 7.20E-20 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32870 | PF00046 | Homeodomain | 6.20E-17 | CL0123 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH13g1279 | K09338 | - | csv:101221080 | 249.98 |