Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1279 ATGAATGATCAAGCTGAAGATCATCATGAAGCAGTACTCATCTCTCAGTTGTACTCTGGATTATACACCCAAATCCTGCCCCAACAAGGTGAGCAAAAAGTGAGGCGGCGACGGCGGAAGAAGAACAAGGGAAGTGGGGAGGGTGGAATGGTTGGGATGAAGAAGAGGAAGCTAAGTGAAGAGCAAGTTCATCTTTTGGAGACAAACTTTGGGAGTGAACATAAATTGGAGTCTGAAAGGAAGGACCGTTTGGCATCTGAATTGGGTCTTGATCCTCGTCAAGTTGCTGTTTGGTTTCAAAACCGCCGTGCTCGTTGGAAGAACAAGAAGCTTGAGGAAGAATACTCTAATTTGAAGAAGCTTCATGAATCTGTTATCATTGAAAAATGTCACCTTGAAACCGAGATTCTGAAGCTGAAAGACCAACTTTCAGAAGCAGAGAAGGAGAAAGAGAGGTTGATAATGGCAGAACGGGCCGAAAGGCCTTTAAGCCAAAGCCCAAGCCCATCACTCTCAATGGATCAAACTTGCTTTGGGGAATTTGGAGCTTATGAAGATGTATTTTACATGGGAGAAAACACTTACATTTATGACATGGAATGGATTAATCCCTACATTTGA 621 43.16 MNDQAEDHHEAVLISQLYSGLYTQILPQQGEQKVRRRRRKKNKGSGEGGMVGMKKRKLSEEQVHLLETNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKLHESVIIEKCHLETEILKLKDQLSEAEKEKERLIMAERAERPLSQSPSPSLSMDQTCFGEFGAYEDVFYMGENTYIYDMEWINPYI 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40746873 40748345 + evm.model.ptg000021l.1279 HCH13g1279 557784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1279 206 FunFam homeobox-leucine zipper protein ATHB-40 48 117 - -
HCH13g1279 206 CDD homeodomain 54 110 IPR001356 GO:0003677(InterPro)
HCH13g1279 206 Gene3D - 50 117 - -
HCH13g1279 206 Coils Coil 101 128 - -
HCH13g1279 206 PRINTS Lambda-repressor HTH signature 89 105 IPR000047 GO:0003677(InterPro)
HCH13g1279 206 PRINTS Lambda-repressor HTH signature 80 89 IPR000047 GO:0003677(InterPro)
HCH13g1279 206 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 35 156 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
HCH13g1279 206 SMART HOX_1 52 113 IPR001356 GO:0003677(InterPro)
HCH13g1279 206 SUPERFAMILY Homeodomain-like 54 117 IPR009057 -
HCH13g1279 206 ProSitePatterns 'Homeobox' domain signature. 84 107 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH13g1279 206 MobiDBLite consensus disorder prediction 29 52 - -
HCH13g1279 206 Pfam Homeodomain 55 108 IPR001356 GO:0003677(InterPro)
HCH13g1279 206 ProSiteProfiles 'Homeobox' domain profile. 49 109 IPR001356 GO:0003677(InterPro)
HCH13g1279 206 Coils Coil 136 159 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1279 HCH-Chr13:40746873 HCH14g0550 HCH-Chr14:34466696 4.30E-49 dispersed
HCH13g1279 HCH-Chr13:40746873 HCH3g0280 HCH-Chr3:1777841 7.20E-20 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32870 PF00046 Homeodomain 6.20E-17 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1279 K09338 - csv:101221080 249.98