Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1280 ATGAGAGTTTCTATTCCTGTTACCAATTCCCAAACAATCTCTTCTTCTTCTCCAAATCATCCAAAACTCAACTCCTCCGGCCGAAATATCGGCTTTCACATCACCACCACCACCACCACCACCACCGATAATAATAATAATAATATTCCAAACTTGTGCTACGAACCCACCTCGGTTCTTGATCTCCGCCGCAGCCCTAGCCCCGTAACGGGTGACAAGAAGGTGGAAGATCGTCATCATCCTCATCCTCATCCTCATCATCACCCCGGTGTTGATCAGTGGGATGAACAAACACTTCATAACCTCGACTGGGATTCCATCATGGGCGATTTGGGTTTGCATGAAGATTCAAATTCATCTCTCAAAAACAATAATTCTAGTGATCATGATCAAGTTTCTCAATTCCCGGAACTTCTTCACTCTCAACCGTTTGATCATGAGCATGAACATGAACATGAACATGATCAAGATCAAGATCAATCACAGCTCGTTTCATCAGATTTCTTCCTCTCTTCAGATCCATATTCCAATCAAAACACGTTTCAAAACTTCAATTCCTTCGATTTAACATCGCAAAACGGTGGAGGAAATTCCAACGTAGGGTTTGAATTTATAGAAGATATCATACGTGCTGCCGATTTCTTCGACACCAACGAGTTACAACTCGCTCACGTTATATTGGACAGGCTCAATCAACGACTCCAATCCCCGACCGGAAAACCACTCAACCGAGCCGCTTTCTTCTTCAAAGAAGCTCTCCAAACCCTTCTATCCGGTTCAACCCGGTCCAACCGGCTTTCCTCCTGGCCGGAAATTGTTCAAACAATCAAAGCCTACAAAGCCTTCTCTGCCATTTCTCCAATTCCCATGTTTTCTCATTTCACGACCAACCAAGCCCTCCTTGAAGCTCTTCACGGTTCTTCCTTCATTCATATCGTCGATTTCGATATCGGTTTCGGTAATCAATACGCTTCCTTCATGAAAGAAATCGCCGAAAAAGCCGAGTCTCGGAAAATTATTCCTCCGGTTCTTCGTATCACAGCCGTCGTGCCGGAAGAATTCGCGGTCGAGAGCAAGTTGATCAGAGAAAATCTTTCCCAGTTTGCTCATGATTTGAAAATTAGGTTCCATATTGATCTAGTCCCTCGCCGGACTTTCGAAACGATGTCGTTTAAATCCGTTAAGTTCATGGACGGTGAGAAGGTGGCGATATTATTAACTCCGGCGATATTTCGCCTTCTCGGGAGTATAAATAGCATCGGTTCTTTCCTCGGCGACGTCCGTCGGATATCGCCGTGCGTTGTCCTTTTCGTTGACGGTGAAGGGTGGATGGATTCCGGCACGGCGTCGTTCAAGAGGAATTTGGTTGATGGGCTTGAATTTTACTCCATGATGATGGAATCGTTGGATGTGGCGGCTGCGGGTGGTGGTGGTGATTGGGTGAGAAGAATTGAGACGTTTGTATTGCGACCAAAGATTTTGGCGGCTGTGGAAGGGGCGGGGAGAATGGCGGCGCCTCCGTGGAGGGAGGTTTTCCACGGCGCCGGGATGAGGCCGGTGGCTCTGAGTCAGTTTGCTGATTTCCAAGCGGAGTGCTTACTTGGCAAGGTCCAAGTCAGAGGATTCCAAGTTGGCAAACGACATGCTGAGCTGGTGCTTTGCTGGCATGAGAGGCCTCTTGTTGCCACGTCAGCATGGAGGTGTTAG 1707 47.22 MRVSIPVTNSQTISSSSPNHPKLNSSGRNIGFHITTTTTTTTDNNNNNIPNLCYEPTSVLDLRRSPSPVTGDKKVEDRHHPHPHPHHHPGVDQWDEQTLHNLDWDSIMGDLGLHEDSNSSLKNNNSSDHDQVSQFPELLHSQPFDHEHEHEHEHDQDQDQSQLVSSDFFLSSDPYSNQNTFQNFNSFDLTSQNGGGNSNVGFEFIEDIIRAADFFDTNELQLAHVILDRLNQRLQSPTGKPLNRAAFFFKEALQTLLSGSTRSNRLSSWPEIVQTIKAYKAFSAISPIPMFSHFTTNQALLEALHGSSFIHIVDFDIGFGNQYASFMKEIAEKAESRKIIPPVLRITAVVPEEFAVESKLIRENLSQFAHDLKIRFHIDLVPRRTFETMSFKSVKFMDGEKVAILLTPAIFRLLGSINSIGSFLGDVRRISPCVVLFVDGEGWMDSGTASFKRNLVDGLEFYSMMMESLDVAAAGGGGDWVRRIETFVLRPKILAAVEGAGRMAAPPWREVFHGAGMRPVALSQFADFQAECLLGKVQVRGFQVGKRHAELVLCWHERPLVATSAWRC 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40767643 40769349 - evm.model.ptg000021l.1280 HCH13g1280 557785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1280 568 ProSiteProfiles GRAS family profile. 195 567 IPR005202 -
HCH13g1280 568 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 160 566 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
HCH13g1280 568 MobiDBLite consensus disorder prediction 1 28 - -
HCH13g1280 568 Pfam GRAS domain family 206 567 IPR005202 -
HCH13g1280 568 MobiDBLite consensus disorder prediction 59 93 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1280 HCH-Chr13:40767643 HCH6g1008 HCH-Chr6:44860721 3.60E-61 dispersed
HCH13g1280 HCH-Chr13:40767643 HCH10g1334 HCH-Chr10:45879793 1.40E-25 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32871 PF03514 GRAS 6.70E-89 CL0063 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1280 K27747 - csv:116401665 709.909