Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1282 ATGCCTATCGATTTGGATAATTCCTCCACCCTTTCCGGCGAACCCAGTATTTCTTCTTCCGGCAATCAACCCAAGAAGAAACGAAATTTGCCCGGAATGCCAGATCCAGATGCGGAAGTAATTGCTTTATCTCCAAAGACCCTTTTAGCTACGAATCGTTTTATTTGTGAAATTTGCAATAAAGGGTTTCAAAGAGATCAAAATCTTCAACTTCATAGACGTGGTCATAATCTTCCTTGGAAACTCCGACAACGGTCAAGTAATGAAGTGAGAAAAAAGGTTTATGTTTGTCCGGAACCGTCGTGTGTTCATCATAATCCGGCGAGAGCTCTCGGTGATCTCACCGGAATTAAGAAACATTTTTGTCGGAAACACGGTGAGAAGAAATGGAAATGCGACAAGTGTTCGAAGAAATACGCTGTTAAGTCTGATTGGAAAGCTCATTCTAAGATTTGTGGAACTCGAGAGTATAAATGTGATTGCCAGACTGTTTTTTCAAGAAGGGATAGTTTTATTACTCATAGAGCTTTTTGTGATGCGTTGGCAAAGGAAACTGCCGGACCTCAGCCGCAGACGGCGGTGGAGAATCCTGTTTTGGAGTCTACCGCTTCTCCGCCTCCACCTCCACTGCCTCCGCCGCCGTCTGCTTCGGCAGCGCCTTCTCAGTTAAGTGATGTGGCGGCATCATCATCACCCTCATCGATTCAGAACAAAGCTATGGAGTTGCTTGAGAATAATCCACCACTATTTGGCCAAACTGGCTTAACTGGTAGCTCCGGTGGCAGTAGTAGTAGTTCAATTGGCAGTAGCAATGGCAACAGTAGTGTATTCGCTAGCTTATTTGCTTCCCCATCTGCATCACTTAGCTTACAACCTCCACCACAACCTCCGGCTTTTAGCGACTTGTTACGAGCCATGGCACAGCCCGATCGTCCACCCGAAATGGCACCGTCTTTAGTTTTTGAACCCCTTTCTCTATGCCTATCAATCAACAACGGATCTTCAATTTTCGGAAGCGGAGGCCAAGAACGCCACCAATATGCACCGCCCCCGCAACCGGCTATGTCTGCCACTGCCCTTCTGCAGAAGGCTGCTCAAATGGGTGCTGCAGCAACTGGCACATCGTTGTTTCGCGGACTTGGTCTATCGTCTTCCTCGTCCTCGGCACAACAAGAGAGTTTGTAA 1185 47.09 MPIDLDNSSTLSGEPSISSSGNQPKKKRNLPGMPDPDAEVIALSPKTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSNEVRKKVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVKSDWKAHSKICGTREYKCDCQTVFSRRDSFITHRAFCDALAKETAGPQPQTAVENPVLESTASPPPPPLPPPPSASAAPSQLSDVAASSSPSSIQNKAMELLENNPPLFGQTGLTGSSGGSSSSSIGSSNGNSSVFASLFASPSASLSLQPPPQPPAFSDLLRAMAQPDRPPEMAPSLVFEPLSLCLSINNGSSIFGSGGQERHQYAPPPQPAMSATALLQKAAQMGAAATGTSLFRGLGLSSSSSSAQQESL 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40802723 40804461 - evm.model.ptg000021l.1282 HCH13g1282 557787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1282 394 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 76 IPR013087 -
HCH13g1282 394 MobiDBLite consensus disorder prediction 1 26 - -
HCH13g1282 394 MobiDBLite consensus disorder prediction 201 218 - -
HCH13g1282 394 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 129 153 - -
HCH13g1282 394 FunFam protein indeterminate-domain 5, chloroplastic-like 108 187 - -
HCH13g1282 394 Gene3D Classic Zinc Finger 34 100 - -
HCH13g1282 394 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 91 125 - -
HCH13g1282 394 MobiDBLite consensus disorder prediction 185 269 - -
HCH13g1282 394 MobiDBLite consensus disorder prediction 249 269 - -
HCH13g1282 394 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
HCH13g1282 394 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 156 192 - -
HCH13g1282 394 SUPERFAMILY beta-beta-alpha zinc fingers 53 150 IPR036236 -
HCH13g1282 394 MobiDBLite consensus disorder prediction 1 37 - -
HCH13g1282 394 Pfam Zinc finger, C2H2 type 54 76 IPR013087 -
HCH13g1282 394 FunFam protein indeterminate-domain 12-like 33 101 - -
HCH13g1282 394 Gene3D Classic Zinc Finger 109 186 - -
HCH13g1282 394 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 384 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH13g1282 394 SMART c2h2final6 95 125 IPR013087 -
HCH13g1282 394 SMART c2h2final6 54 76 IPR013087 -
HCH13g1282 394 SMART c2h2final6 130 150 IPR013087 -
HCH13g1282 394 MobiDBLite consensus disorder prediction 219 241 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1282 HCH-Chr13:40802723 HCH14g0555 HCH-Chr14:34492430 4.60E-116 dispersed
HCH13g1282 HCH-Chr13:40802723 HCH2g0698 HCH-Chr2:50767069 2.20E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32872 PF12171 zf-C2H2_jaz 5.50E-05 CL0361 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1282 K25869 - vvi:100263342 484.952