Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH13g1285 | ATGGCTCAGAGTGCAAGAACAATAGCTTCCTCCCTTACCTCCAGCTATGGCAATGGCAATGCCAATGCCTATGCCAATGATCACACCTTTCCAAATGGAGGGTATGATTATGATAGCGATGGTTCCAATTTTGCACCTCCTACTCCCACTACCATTTCCATGGCAATTCCACCAGAACTTGATGCTGTCATTCCTTTGATCGACAAATTTCAGGTGGAAGTATTCTTAAGGATGATGCATAAACAGATCCATTCTTCTGGAAAACGTGGATTTTTTTCCAAAAAATCTGTTGGCCCTCAAATTCGAGACAGATTTACATTCGAGGATATGTTGTGTTTCCAAAAGGATCCTATACCAACTTCACTACTTAAAGTTAACTCTGACCTCATGAGCCGAGCTATTAAACTATTCCAAATTGTATTGAAGTACATGGGTGTTGACTCCTCTGATAGAGTCAATGCAGCCAACTTAGATGAACAAATTGAGCTAGTTGCAAAACTATACAAGCACACTTTGAAACGTTCAGAGCTTCGAGATGAACTTTTTATCCAAGTTTCAAAGCAAACTAGAAATACTCCAGATAGGCAATATCTGATCAAAGCATGGGAGCTAATGTATCTATGTGCATCAGCAATGCCTCCTAGCAAGGATATTGGTGGATATCTTTCGGAATATGTTCATAACGTTGTACAAGGCATAAGTACTGATTCAGAGGTTCAAGTTCTTGCATTAAATACACTAAATGCTTTAAAGCGTTGCATGAAGGCTGGTCCCAGGCATATAATACCTGGTCGTGAGGAAATTGAAGCTCTTTTAACTGGTCGAAAGCTTACAACCATTGTGTTCTTCTTGGATGAAACTTTTGAGGAAATTACATATGACATGACAACAACGGTTGCTGATTCTGTTGAGGAACTTTCAGGAATTATAAAACTATCAGCACACTCTAGCTTCAGTCTTTTTGAATGCCGCAAGATTGTCAATGGGGCTAAATCACTTGATCTAGGAAATGAGGAGTATATTGGGCTCGATGATAACAAATATATTGGAGATCTATTAGCAGAATTCAAGGCAGCAAAAGATCGAAGTAAAGGAGAAATTTTGCACTTCAAACTGACATTTAAAAAGAAGCTGTTCCGGGAGTCTGATGAAGCTGTAACTGACCCAATGTTTGTACAGCTGTCATATGTCCAACTGCAGCATGACTATTTGTTGGGTAATTATCCTGTTGGAAGGGATGATGCTGCACAGCTATCGGCATTACAAATTCTTGTTGAAATTGGATTTTTTTCTACTCCTGAATCTTGCACTGATTGGAATTTGCTTTTGGAAAGATACGTACCGAGACAAATTGCCATAACAAGACCAAAGCGAGAGTGGGAGTTGGATATTCTTTCTCGTTATCGTTCCATGGAACATCTTACAAAGGATGATGCGAGACAACAATTTCTACGGATATTGAGAACACTTCCCTATGGGAATTCGGTTTTCTTTGGCGTACGCAAAATTGATGATCCCATTGGACTTCTACCTGGACGGATAATCTTGGGTATCAACAAAAGAGGGGTTCATTTCTTCCGTCCAGTTCCAAAGGAGTATTTACATTCGGCTGAATTAAGAGACATAATGCAGTTTGGTAGCAGCAATACTGCTGTCTTTTTTAAGATGAGAGTTGCTGGTGTCCTACATATTTTCCAGTTCGAGACCAAGCAGGGAGAAGAAATCTGCGTTGCTCTACAGACACACATTAATGATGTCATGTTGCGTCGCTACTCCAAAGCTAAATCTGCTGCTACTGGCTCAGTACTTGGAGATCCTTCCTGCAATTTTAAGACACACAATGTGGAAGCTTATGAGAAACGAGTTCAGGATTTGACTAAGGGTGTTGAAGAGTCTCAAAGAAATGCTGAAATGTTGCTGAAGGAATTGCATGAAAAGAATGAGCGAGAAATGATCATGCTGGAAGAATTGGAGGCCTTAAAAGAATCCTTGAGAGTTGAAAAGCGAAACTTAGCTGAGGTAACAAGAAATCTTGATAGACTCAGATCACAGTATGAAGAAAAAGACAAGGCACATGAGGACATGGTACTGGAAAAAAAGGGAATGGAAGCAAAACTAGCCAAGTTGAGCGCTACAGTTGTGGAAAATAATATGAAAAAAGATATGGTTGGAATTGATGAACAGGTTGTACAAAAGCTTCAAGATGAGTTGAGACTACGAAATGATGAGTTGCGAGGAACTGAAGAAACTAGAAAGAAGCTGGTAAATGAAAAACTTTTGTTGGAACAAAGAATTTCGGGACTTGAAAAGAAGACTGTTGATGAGATAGACAACTTTGAACTACAACGCAAAGTCCTGAAACTTAGAGTGGCAGAACTTGAAAAGAAGCTTGAAGAGGTAACTCAAGAGTTAGCCACCAGTGAGTCCACTCTTGCAATTAGGAACGCTGATTTTGCCACACTGCAAAATAATTTGAAGGAATTAGAGGAATTGCGAGAGATGAAAGAGGATATTGACCGAAAGAATGAGCAAGCAGCCAACATTTTGAAAATGCAATGGGCACAAATAGCTGAGTTGGAAGCGCTTTACAAGGAAGAACAAGTTTTACGAAAGCGCTATTTCAACATGATAGAAGATATGAAAGGAAAGATTAGAGTTTACTGTCGACTAAGACCTCTTAATGAAAAAGAAATTTATGAGAAAGGAAGAAATATGCTTACAACTCTAGATGAGTTCACCGTTGAACATCCATGGAAGGATGATAAGCCTAAGCAACATATGTATGACCGCGTATTTGGTGACACTGTCTCACAAGAAGATGTCTTTGAGGATACAAGGTATCTAGTCCAGTCTGCAGTAGATGGCTATAATGTCTGCATATTTGCTTATGGTCAAACTGGTTCTGGGAAGACATTTACCATATATGGATCTGAGGAGCACCCTGGACTGACACCACGTGCTACTGGAGAACTTTTTAGGATTTTGAAGCGGGATAGTAACAAGTTCTCATTTTCATTAAAGGCATACATGGTGGAATTATATCAAGATACGCTAGTGGATCTTCTTTTGCCAAAGAATGCAAAACGCTTGAAATTGGATATTAAAAAGGATACAAAGGGCATGGTATCCATTGAAAATGTCACTATAAGTTCTGTCCATACTCTCGAAGAATTGAAAAGTATTATTCGTAGAGGGTCGGAGCAACGACATACTTCAGAGACTCAGATGAATGAAGAAAGTTCAAGATCCCATCTTATACTCTCAATTATTATTGAAAGTACCAACCTTCAGACACAATCTGCTTCCAAAGGAAAGCTTAGTTTTGTGGATCTCGCGGGTTCAGAGAGAGTGAAGAAGTCAGGTTCTTCTGGTAATCAACTTAAGGAAGCTCAAAGCATAAATAAATCACTTTCAGCGCTTGGGGATGTTATTAGTGTTTTGTCTTCTGGTGGCCAGCACATACCTTACAGAAATCATAAATTGACAATGCTAATGAGTGATTCACTCGGTGGTAACGCTAAAACATTAATGTTTGTCAATGTGTCTCCAGCTGAATCCAATTTAGATGAGACGTACAATTCACTCACGTATGCATCCAGAGTTCGATCGATTGTTAATGATCCAAGCAAAAATGTATCATCAAAAGAGGTTGCTCGACTGAAAAAATCGATTGCTTATTGGAAAGAACAAGCGGGTAGAAGGGGAGAGGATGACGATTTAGAAGAAATTCAAGAAGAGCGACAAACGAGAGAAAAAGCAAACGGCCGCCCTTCCATGTAG | 3780 | 39.47 | MAQSARTIASSLTSSYGNGNANAYANDHTFPNGGYDYDSDGSNFAPPTPTTISMAIPPELDAVIPLIDKFQVEVFLRMMHKQIHSSGKRGFFSKKSVGPQIRDRFTFEDMLCFQKDPIPTSLLKVNSDLMSRAIKLFQIVLKYMGVDSSDRVNAANLDEQIELVAKLYKHTLKRSELRDELFIQVSKQTRNTPDRQYLIKAWELMYLCASAMPPSKDIGGYLSEYVHNVVQGISTDSEVQVLALNTLNALKRCMKAGPRHIIPGREEIEALLTGRKLTTIVFFLDETFEEITYDMTTTVADSVEELSGIIKLSAHSSFSLFECRKIVNGAKSLDLGNEEYIGLDDNKYIGDLLAEFKAAKDRSKGEILHFKLTFKKKLFRESDEAVTDPMFVQLSYVQLQHDYLLGNYPVGRDDAAQLSALQILVEIGFFSTPESCTDWNLLLERYVPRQIAITRPKREWELDILSRYRSMEHLTKDDARQQFLRILRTLPYGNSVFFGVRKIDDPIGLLPGRIILGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNTAVFFKMRVAGVLHIFQFETKQGEEICVALQTHINDVMLRRYSKAKSAATGSVLGDPSCNFKTHNVEAYEKRVQDLTKGVEESQRNAEMLLKELHEKNEREMIMLEELEALKESLRVEKRNLAEVTRNLDRLRSQYEEKDKAHEDMVLEKKGMEAKLAKLSATVVENNMKKDMVGIDEQVVQKLQDELRLRNDELRGTEETRKKLVNEKLLLEQRISGLEKKTVDEIDNFELQRKVLKLRVAELEKKLEEVTQELATSESTLAIRNADFATLQNNLKELEELREMKEDIDRKNEQAANILKMQWAQIAELEALYKEEQVLRKRYFNMIEDMKGKIRVYCRLRPLNEKEIYEKGRNMLTTLDEFTVEHPWKDDKPKQHMYDRVFGDTVSQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSEEHPGLTPRATGELFRILKRDSNKFSFSLKAYMVELYQDTLVDLLLPKNAKRLKLDIKKDTKGMVSIENVTISSVHTLEELKSIIRRGSEQRHTSETQMNEESSRSHLILSIIIESTNLQTQSASKGKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISVLSSGGQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLTYASRVRSIVNDPSKNVSSKEVARLKKSIAYWKEQAGRRGEDDDLEEIQEERQTREKANGRPSM | 1259 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 40867370 | 40880990 | + | evm.model.ptg000021l.1285 | HCH13g1285 | 557790 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH13g1285 | 1259 | FunFam | Kinesin-like calmodulin-binding protein (ZWICHEL) | 92 | 274 | - | - | |
| HCH13g1285 | 1259 | Pfam | FERM central domain | 382 | 498 | IPR019748 | - | |
| HCH13g1285 | 1259 | CDD | FERM_C_KCBP | 494 | 600 | - | - | |
| HCH13g1285 | 1259 | SUPERFAMILY | Second domain of FERM | 375 | 492 | IPR035963 | - | |
| HCH13g1285 | 1259 | CDD | KISc_C_terminal | 881 | 1206 | - | - | |
| HCH13g1285 | 1259 | SMART | MyTH4_1 | 113 | 272 | IPR000857 | GO:0005856(InterPro) | |
| HCH13g1285 | 1259 | Gene3D | MyTH4 domain | 92 | 274 | IPR038185 | - | |
| HCH13g1285 | 1259 | Gene3D | - | 495 | 602 | IPR011993 | - | |
| HCH13g1285 | 1259 | SUPERFAMILY | PH domain-like | 497 | 585 | - | - | |
| HCH13g1285 | 1259 | FunFam | Kinesin-like calmodulin-binding protein (ZWICHEL) | 276 | 379 | - | - | |
| HCH13g1285 | 1259 | PANTHER | KINESIN-LIKE PROTEIN KLP-3 | 598 | 1246 | IPR027640 | GO:0003777(InterPro)|GO:0007018(InterPro) | |
| HCH13g1285 | 1259 | MobiDBLite | consensus disorder prediction | 1231 | 1253 | - | - | |
| HCH13g1285 | 1259 | MobiDBLite | consensus disorder prediction | 1231 | 1259 | - | - | |
| HCH13g1285 | 1259 | ProSitePatterns | Kinesin motor domain signature. | 1104 | 1115 | IPR019821 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro) | |
| HCH13g1285 | 1259 | CDD | FERM_B-lobe | 392 | 490 | IPR019748 | - | |
| HCH13g1285 | 1259 | Coils | Coil | 730 | 771 | - | - | |
| HCH13g1285 | 1259 | SMART | B41_5 | 273 | 497 | IPR019749 | - | |
| HCH13g1285 | 1259 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 883 | 1231 | IPR027417 | - | |
| HCH13g1285 | 1259 | Gene3D | - | 1207 | 1254 | - | - | |
| HCH13g1285 | 1259 | Gene3D | - | 389 | 490 | IPR014352 | - | |
| HCH13g1285 | 1259 | ProSiteProfiles | FERM domain profile. | 277 | 591 | IPR000299 | GO:0005856(InterPro) | |
| HCH13g1285 | 1259 | PRINTS | Kinesin heavy chain signature | 955 | 976 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| HCH13g1285 | 1259 | PRINTS | Kinesin heavy chain signature | 1105 | 1123 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| HCH13g1285 | 1259 | PRINTS | Kinesin heavy chain signature | 1154 | 1175 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| HCH13g1285 | 1259 | PRINTS | Kinesin heavy chain signature | 1074 | 1091 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| HCH13g1285 | 1259 | ProSiteProfiles | MyTH4 domain profile. | 113 | 272 | IPR000857 | GO:0005856(InterPro) | |
| HCH13g1285 | 1259 | Coils | Coil | 776 | 851 | - | - | |
| HCH13g1285 | 1259 | SUPERFAMILY | Prismane protein-like | 826 | 887 | IPR011254 | GO:0003824(InterPro)|GO:0016491(InterPro) | |
| HCH13g1285 | 1259 | FunFam | Kinesin-like calmodulin binding protein | 380 | 491 | - | - | |
| HCH13g1285 | 1259 | Pfam | MyTH4 domain | 166 | 270 | IPR000857 | GO:0005856(InterPro) | |
| HCH13g1285 | 1259 | Gene3D | - | 276 | 380 | - | - | |
| HCH13g1285 | 1259 | FunFam | Kinesin-like calmodulin-binding protein (ZWICHEL) | 495 | 603 | - | - | |
| HCH13g1285 | 1259 | FunFam | Kinesin-like calmodulin-binding protein | 827 | 1206 | - | - | |
| HCH13g1285 | 1259 | ProSiteProfiles | Kinesin motor domain profile. | 883 | 1204 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| HCH13g1285 | 1259 | SMART | kinesin_4 | 881 | 1212 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| HCH13g1285 | 1259 | Pfam | Kinesin motor domain | 889 | 1204 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| HCH13g1285 | 1259 | Pfam | PTB domain (IRS-1 type) | 508 | 584 | IPR002404 | - | |
| HCH13g1285 | 1259 | Coils | Coil | 615 | 698 | - | - | |
| HCH13g1285 | 1259 | Gene3D | Kinesin motor domain | 870 | 1206 | IPR036961 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH13g1285 | HCH-Chr13:40867370 | HCH6g0582 | HCH-Chr6:34391386 | 1.80E-68 | dispersed | |
| HCH13g1285 | HCH-Chr13:40867370 | HCH3g0576 | HCH-Chr3:3849004 | 2.60E-64 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH13g1285 | K27887 | - | csv:101206704 | 2105.87 |