Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1287 ATGAATGATGAGAAGGAGAACGAGGATTCTGGAGGACAAGGAGTAATAGTTGCTTTAGAAGAAGGCAACTCGGTTAATTTAAAAGATGTGCTCCACGATTCTCATCCCTCAGTGCCAGATGTTGGAGGTCCAGAGTCTTTTGAAAATAAGAACGATTCACCCGAGAATCATGTACAGACAGTGATAGTAGCTTCTGAGGAGTACAATTTAGATAAACCCACAATTCCAGAGCAATCAAATCTAAATTCCGCCACTTCAATTCCCTCTAATCATGACCACCAACAGTTAGATGAGCCTGATATAGATATACATCCCGCTTCTGATGTCAAGTCTGTGCCTGATGAATTGCCCCCACGGGAGTTGGGTCACCTGGAAACTGCTCAATCGTCCAGGGATGCCAAATCTGAGGCCTTTGAGATGCCTGAAATCAAAACCAGTTCTCTTGATGACACTTCAACTGCTAATGGTGATGAACCTGTTACACCTCTTCCAGTGTCTCCTTGTATCAAAGCTGAAATTGAGAATGCTTTAGACTTGAAGGTCAATGAAAACAGTGTTACTACACCTCACAATGGGCATTCAAATGTGAGCCATTCGTTTCTTTTGGATGAAAATCATATTTCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCCGCTTTCATGAAAGAGCTTGACAGCTTTTTCAGAGAAAGAAGCCTGGAATTCAAACCTCCCAAGTTTTATGGAGAGTGTCTGAATTGCCTTAAGTTATGGAGGGCCGTGACTAGATTGGGTGGCTATGACAAGGTGACTTCATGCAAGTTGTGGCGGCAAGTTGGAGAGTCTTTCAAGCCCCCAAAGACATGTACGACAGTTTCATGGACATTCAGAGGATTTTATGAGAAGGCTCTCCTTGATTATGAGAGGCATAAAATCCATGGTGGGGAGCTGACTGTACCTATTGCCGCCAACTCAGAACCAATAAGTATTGAAAATCAGGGATCAGGTTCGGGTAGAGCGCGAAGAGATGCTGCTGCACGTGCGATGCAGGGCTGGCACTCACAACGTCTTCTGGGTAATGGTGAAGTTAGTGACCCTATTATCAAGGATAAAAACTCACTTTCAATGCAAAAAAGGGAAAAACAACTCAAAAGCATCGGTCTTAAACGGAAGAAACCATCTTACATGGAGCATGCCATCAAATCAGCACGTACAAAATCATCAAAACCACAGTTGGACATCGCAGTTGTTGATATTGGACCACCAGCTGATTGGGTAAAGATCAATGTGCAGAAAACCAAAGATTGTTATGAGGTCTATGCATTAGTTCCTGGACTACTCCGTGAGGAGGTACGTGTTCAATCAGATCCTGCAGGACGCCTGGTTATTAGTGGTGAACCCGAACATCCCGATAATCCGTGGGGTGTTACACCCTTTAAAAAGGTTGTCAGCCTACCTTCAAGGATTGACCCGCATCAGACGTCTGCTGTTGTCACCTTACATGGACAGTTGTTTGTTCGTGTTCCGTTCGAACAGTTGGAATGA 1530 43.99 MNDEKENEDSGGQGVIVALEEGNSVNLKDVLHDSHPSVPDVGGPESFENKNDSPENHVQTVIVASEEYNLDKPTIPEQSNLNSATSIPSNHDHQQLDEPDIDIHPASDVKSVPDELPPRELGHLETAQSSRDAKSEAFEMPEIKTSSLDDTSTANGDEPVTPLPVSPCIKAEIENALDLKVNENSVTTPHNGHSNVSHSFLLDENHISEGSESGTEEEQSAFMKELDSFFRERSLEFKPPKFYGECLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIHGGELTVPIAANSEPISIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNSLSMQKREKQLKSIGLKRKKPSYMEHAIKSARTKSSKPQLDIAVVDIGPPADWVKINVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40887592 40892229 + evm.model.ptg000021l.1287 HCH13g1287 557792

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1287 509 SMART ARID_2 213 303 - -
HCH13g1287 509 FunFam AT-rich interactive domain-containing protein 3 216 315 - -
HCH13g1287 509 CDD ACD_sHsps-like 424 504 - -
HCH13g1287 509 Gene3D - 400 509 IPR008978 -
HCH13g1287 509 MobiDBLite consensus disorder prediction 145 159 - -
HCH13g1287 509 SUPERFAMILY HSP20-like chaperones 418 505 IPR008978 -
HCH13g1287 509 MobiDBLite consensus disorder prediction 93 139 - -
HCH13g1287 509 Pfam Hsp20/alpha crystallin family 426 506 IPR002068 -
HCH13g1287 509 Gene3D - 216 312 IPR036431 GO:0003677(InterPro)
HCH13g1287 509 Pfam ARID/BRIGHT DNA binding domain 219 303 IPR001606 GO:0003677(InterPro)
HCH13g1287 509 SMART bright_3 217 308 IPR001606 GO:0003677(InterPro)
HCH13g1287 509 CDD ARID 221 303 - -
HCH13g1287 509 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 409 509 IPR002068 -
HCH13g1287 509 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 92 507 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)
HCH13g1287 509 FunFam AT-rich interactive domain-containing protein 3 401 509 - -
HCH13g1287 509 SUPERFAMILY ARID-like 210 318 IPR036431 GO:0003677(InterPro)
HCH13g1287 509 MobiDBLite consensus disorder prediction 72 92 - -
HCH13g1287 509 ProSiteProfiles ARID domain profile. 216 307 IPR001606 GO:0003677(InterPro)
HCH13g1287 509 MobiDBLite consensus disorder prediction 32 165 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1287 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0028 HCH-Chr12:182160 HCH13g1287 HCH-Chr13:40887592 3.20E-122 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH6g1418 . 28 367 ARID Transcription Factor Family AT1G04880 59.3 1.4e-105 380.2
HCH12g0028 . 74 352 ARID Transcription Factor Family AT1G20910 64.9 2.4e-101 365.9
HCH13g1287 . 212 477 ARID Transcription Factor Family AT1G20910 61.4 3.3e-90 328.9
HCH12g0090 . 18 313 ARID Transcription Factor Family AT1G76110 65.8 1.1e-110 396.7
HCH12g0028 . 58 382 ARID Transcription Factor Family AT1G76510 67.8 2.3e-124 442.6
HCH13g1287 . 187 507 ARID Transcription Factor Family AT1G76510 61.3 2.4e-110 396.0
HCH6g0920 . 53 335 ARID Transcription Factor Family AT3G13350 55.3 3.2e-83 305.4
HCH6g0039 . 2 773 ARID Transcription Factor Family AT3G43240 59.5 6.0e-266 913.7
HCH4g1549 . 2 766 ARID Transcription Factor Family AT3G43240 59.7 4.3e-264 907.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32873 PF00011 HSP20 8.40E-06 CL0190 HCH TR