Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1287 ATGAATGATGAGAAGGAGAACGAGGATTCTGGAGGACAAGGAGTAATAGTTGCTTTAGAAGAAGGCAACTCGGTTAATTTAAAAGATGTGCTCCACGATTCTCATCCCTCAGTGCCAGATGTTGGAGGTCCAGAGTCTTTTGAAAATAAGAACGATTCACCCGAGAATCATGTACAGACAGTGATAGTAGCTTCTGAGGAGTACAATTTAGATAAACCCACAATTCCAGAGCAATCAAATCTAAATTCCGCCACTTCAATTCCCTCTAATCATGACCACCAACAGTTAGATGAGCCTGATATAGATATACATCCCGCTTCTGATGTCAAGTCTGTGCCTGATGAATTGCCCCCACGGGAGTTGGGTCACCTGGAAACTGCTCAATCGTCCAGGGATGCCAAATCTGAGGCCTTTGAGATGCCTGAAATCAAAACCAGTTCTCTTGATGACACTTCAACTGCTAATGGTGATGAACCTGTTACACCTCTTCCAGTGTCTCCTTGTATCAAAGCTGAAATTGAGAATGCTTTAGACTTGAAGGTCAATGAAAACAGTGTTACTACACCTCACAATGGGCATTCAAATGTGAGCCATTCGTTTCTTTTGGATGAAAATCATATTTCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCCGCTTTCATGAAAGAGCTTGACAGCTTTTTCAGAGAAAGAAGCCTGGAATTCAAACCTCCCAAGTTTTATGGAGAGTGTCTGAATTGCCTTAAGTTATGGAGGGCCGTGACTAGATTGGGTGGCTATGACAAGGTGACTTCATGCAAGTTGTGGCGGCAAGTTGGAGAGTCTTTCAAGCCCCCAAAGACATGTACGACAGTTTCATGGACATTCAGAGGATTTTATGAGAAGGCTCTCCTTGATTATGAGAGGCATAAAATCCATGGTGGGGAGCTGACTGTACCTATTGCCGCCAACTCAGAACCAATAAGTATTGAAAATCAGGGATCAGGTTCGGGTAGAGCGCGAAGAGATGCTGCTGCACGTGCGATGCAGGGCTGGCACTCACAACGTCTTCTGGGTAATGGTGAAGTTAGTGACCCTATTATCAAGGATAAAAACTCACTTTCAATGCAAAAAAGGGAAAAACAACTCAAAAGCATCGGTCTTAAACGGAAGAAACCATCTTACATGGAGCATGCCATCAAATCAGCACGTACAAAATCATCAAAACCACAGTTGGACATCGCAGTTGTTGATATTGGACCACCAGCTGATTGGGTAAAGATCAATGTGCAGAAAACCAAAGATTGTTATGAGGTCTATGCATTAGTTCCTGGACTACTCCGTGAGGAGGTACGTGTTCAATCAGATCCTGCAGGACGCCTGGTTATTAGTGGTGAACCCGAACATCCCGATAATCCGTGGGGTGTTACACCCTTTAAAAAGGTTGTCAGCCTACCTTCAAGGATTGACCCGCATCAGACGTCTGCTGTTGTCACCTTACATGGACAGTTGTTTGTTCGTGTTCCGTTCGAACAGTTGGAATGA 1530 43.99 MNDEKENEDSGGQGVIVALEEGNSVNLKDVLHDSHPSVPDVGGPESFENKNDSPENHVQTVIVASEEYNLDKPTIPEQSNLNSATSIPSNHDHQQLDEPDIDIHPASDVKSVPDELPPRELGHLETAQSSRDAKSEAFEMPEIKTSSLDDTSTANGDEPVTPLPVSPCIKAEIENALDLKVNENSVTTPHNGHSNVSHSFLLDENHISEGSESGTEEEQSAFMKELDSFFRERSLEFKPPKFYGECLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIHGGELTVPIAANSEPISIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNSLSMQKREKQLKSIGLKRKKPSYMEHAIKSARTKSSKPQLDIAVVDIGPPADWVKINVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40887592 40892229 + evm.model.ptg000021l.1287 HCH13g1287 557792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1287 509 SMART ARID_2 213 303 - -
HCH13g1287 509 FunFam AT-rich interactive domain-containing protein 3 216 315 - -
HCH13g1287 509 CDD ACD_sHsps-like 424 504 - -
HCH13g1287 509 Gene3D - 400 509 IPR008978 -
HCH13g1287 509 MobiDBLite consensus disorder prediction 145 159 - -
HCH13g1287 509 SUPERFAMILY HSP20-like chaperones 418 505 IPR008978 -
HCH13g1287 509 MobiDBLite consensus disorder prediction 93 139 - -
HCH13g1287 509 Pfam Hsp20/alpha crystallin family 426 506 IPR002068 -
HCH13g1287 509 Gene3D - 216 312 IPR036431 GO:0003677(InterPro)
HCH13g1287 509 Pfam ARID/BRIGHT DNA binding domain 219 303 IPR001606 GO:0003677(InterPro)
HCH13g1287 509 SMART bright_3 217 308 IPR001606 GO:0003677(InterPro)
HCH13g1287 509 CDD ARID 221 303 - -
HCH13g1287 509 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 409 509 IPR002068 -
HCH13g1287 509 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 92 507 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)
HCH13g1287 509 FunFam AT-rich interactive domain-containing protein 3 401 509 - -
HCH13g1287 509 SUPERFAMILY ARID-like 210 318 IPR036431 GO:0003677(InterPro)
HCH13g1287 509 MobiDBLite consensus disorder prediction 72 92 - -
HCH13g1287 509 ProSiteProfiles ARID domain profile. 216 307 IPR001606 GO:0003677(InterPro)
HCH13g1287 509 MobiDBLite consensus disorder prediction 32 165 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0028 HCH-Chr12:182160 HCH13g1287 HCH-Chr13:40887592 3.20E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32873 PF00011 HSP20 8.40E-06 CL0190 HCH TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1287 - - - 0.0