Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH13g1288 | ATGTCGGATCTTCTCCATCAAAATCCCTCATCTTCTTCCATTTCTCCTCCACCCGATCTTCACTTACCTCTCTCTTGGCCTTCCGATTCCAAAATCTCTCTCGATTGGATTCTAAATCTCATTTCTGCTTTCGATTGGTCTTCCAGAAACCTACCTCCTTCTCAATTTCCCTCCCTCCTCCCTCTTTCTGTTTTCGATCCTCTCATTCTCTCCGCTTCTAAAATCCTCCACAAAGAACCCAATTGCCTCCATATTCTCGACCATGACCCCACCACCCACTCTCCTCCCTCTCCATCTCCATCCGTTGTCGTCGTCGGTGACATCCACGGCCAATTTCACGATCTCCTTCTTCTCTTCCAACTTGCCGGCTTCCCTTCTCAAGATCGTTTCTTTGTCTTCAACGGTGATTACGTCGACCGAGGCGCTTGGGGTCTTGAAACTTTCGTCCTCTTATTGGCTTTCAAGGTCTTTATCCCCCATCGAATCTTTCTTCTTCGTGGTAATCACGAGTCCAAATACTGCACTTCCGTCTATGGTTTTGAAAAAGAAGTCATGACCAAGTACGGTGATCACGGTAAACATGTTTATAGGAAGTGTTTGGGTTGTTTTGAAGCACTTCCTTTAGCCTCCATTATTGCGAGTTCTGTTTATACAGCTCACGGAGGCCTCTTCCGTAGCATCCCCATTACTCCTCCTTCTAAAAGATCGAAACCTAAAAAAAAAACCCATTCTCAACAATCCAACAATACCTTGTCTCTTGGTTCTCTCGACGAATTATCCAAAGCTCGAAGATCCGTCCTTGATCCCCCCTGGGAAGGCTCCAATTTAATTCCCGGTGATGTTCTCTGGTCTGATCCTTCCATGAATCCCGGTCTCTCCCCCAATACTGAGAGAGGCATTGGTCTCTTGTGGGGTCCTGATTGCACCGAGGAATTTTTGAAAAAATTCAATCTCAAGTTAATTATCAGATCCCATGAAGGTCCCGATGCTAGAGAAAAAAGGCCTGGTCTTGGAGGAATGGATCAGGGTTACACAATAGACCATGTTGTAGATTCTGGAAAGCTCATTACCTTGTTTAGTGCTCCAGACTATCCACAATTTCAGGCTACTGAGGAGAGGTACAAAAACAAAGGTGCATACATTGTTCTGGAACCTCCAAATTTTGATGTTCCGATCATCCATAGTTTTGAAGCCATCACTCCAAGACCAAAGGTCAATGCATATTATGACTATGAGGATGTAATTGATTCTGATGAAGAGTTAGACTTGGCAACAATGGTAACTGATCATTGA | 1293 | 44.55 | MSDLLHQNPSSSSISPPPDLHLPLSWPSDSKISLDWILNLISAFDWSSRNLPPSQFPSLLPLSVFDPLILSASKILHKEPNCLHILDHDPTTHSPPSPSPSVVVVGDIHGQFHDLLLLFQLAGFPSQDRFFVFNGDYVDRGAWGLETFVLLLAFKVFIPHRIFLLRGNHESKYCTSVYGFEKEVMTKYGDHGKHVYRKCLGCFEALPLASIIASSVYTAHGGLFRSIPITPPSKRSKPKKKTHSQQSNNTLSLGSLDELSKARRSVLDPPWEGSNLIPGDVLWSDPSMNPGLSPNTERGIGLLWGPDCTEEFLKKFNLKLIIRSHEGPDAREKRPGLGGMDQGYTIDHVVDSGKLITLFSAPDYPQFQATEERYKNKGAYIVLEPPNFDVPIIHSFEAITPRPKVNAYYDYEDVIDSDEELDLATMVTDH | 430 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 40893258 | 40899427 | - | evm.model.ptg000021l.1288 | HCH13g1288 | 557793 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH13g1288 | 430 | SMART | pp2a_7 | 70 | 400 | IPR006186 | GO:0016787(InterPro) | |
| HCH13g1288 | 430 | FunFam | Serine/threonine-protein phosphatase | 44 | 424 | - | - | |
| HCH13g1288 | 430 | Pfam | Calcineurin-like phosphoesterase | 102 | 326 | IPR004843 | GO:0016787(InterPro) | |
| HCH13g1288 | 430 | PANTHER | SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED | 26 | 422 | IPR051134 | - | |
| HCH13g1288 | 430 | PRINTS | Serine/threonine phosphatase family signature | 101 | 128 | IPR006186 | GO:0016787(InterPro) | |
| HCH13g1288 | 430 | PRINTS | Serine/threonine phosphatase family signature | 131 | 158 | IPR006186 | GO:0016787(InterPro) | |
| HCH13g1288 | 430 | PRINTS | Serine/threonine phosphatase family signature | 164 | 188 | IPR006186 | GO:0016787(InterPro) | |
| HCH13g1288 | 430 | PRINTS | Serine/threonine phosphatase family signature | 201 | 227 | IPR006186 | GO:0016787(InterPro) | |
| HCH13g1288 | 430 | PRINTS | Serine/threonine phosphatase family signature | 354 | 370 | IPR006186 | GO:0016787(InterPro) | |
| HCH13g1288 | 430 | PRINTS | Serine/threonine phosphatase family signature | 260 | 287 | IPR006186 | GO:0016787(InterPro) | |
| HCH13g1288 | 430 | Gene3D | - | 55 | 421 | IPR029052 | - | |
| HCH13g1288 | 430 | MobiDBLite | consensus disorder prediction | 229 | 254 | - | - | |
| HCH13g1288 | 430 | SUPERFAMILY | Metallo-dependent phosphatases | 55 | 403 | IPR029052 | - | |
| HCH13g1288 | 430 | ProSitePatterns | Serine/threonine specific protein phosphatases signature. | 165 | 170 | IPR006186 | GO:0016787(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH13g0466 | HCH-Chr13:3231544 | HCH13g1288 | HCH-Chr13:40893258 | 3.80E-111 | dispersed | |
| HCH13g1288 | HCH-Chr13:40893258 | HCH7g0067 | HCH-Chr7:447895 | 2.20E-47 | dispersed | |
| HCH13g1288 | HCH-Chr13:40893258 | HCH2g0898 | HCH-Chr2:52476012 | 8.20E-50 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH13g1288 | K04460 | - | csv:116402529 | 676.781 |