Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH13g1292 | ATGAGTCGCCACATCAGAATTCTGGCTTCCAAATCAAATAACTCAGAGCCCTCATCAGGTGCTCCAGCCCCTGAAGGAGTTGCTTTAGAATCAGACTTTGTGGTAATACTAGCTGCCTTGCTATGTGCTCTGATATGCATGGTTGGTTTAATAGCAGTGGCTCGATGTGCTTGGCTTCGTCGTGGCTCTGGACCTGGACCCAATAATTCAAACCACTCTTCTGCTAATAAAGGCCTTAAAAAGAAAACCCTTCAATCCCTTCCAAAATTCACATACACTCAAAGGCAAAGCCAAAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCAATTCAGGAGAATGTGCTATTTGTCTTGGTGAATTCTTGGAAGGAGATGAGATTAGGATGCTCCCACAGTGTGGTCATTGTTTTCATATGGGATGTGTAGATACTTGGTTGGGATCACACTCTTCTTGTCCATCTTGTCGTCAGATTCTGGTGGTTAATACTACTACTAGATGTCATAACTGCGGTCATTTACCTGCTGCTGCTGTCAATGAACAGGAACTCAAGGCAAGGGAAGATCATAATCCTGTTTCTAACAACAACAACAATAATAACAGTAGGGGTTTCTTGCCTTGA | 621 | 44.28 | MSRHIRILASKSNNSEPSSGAPAPEGVALESDFVVILAALLCALICMVGLIAVARCAWLRRGSGPGPNNSNHSSANKGLKKKTLQSLPKFTYTQRQSQSQSQSQSQSQSNSGECAICLGEFLEGDEIRMLPQCGHCFHMGCVDTWLGSHSSCPSCRQILVVNTTTRCHNCGHLPAAAVNEQELKAREDHNPVSNNNNNNNSRGFLP | 206 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 40915909 | 40916529 | - | evm.model.ptg000021l.1292 | HCH13g1292 | 557797 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH13g1292 | 206 | SUPERFAMILY | RING/U-box | 86 | 165 | - | - | |
HCH13g1292 | 206 | SMART | ring_2 | 114 | 155 | IPR001841 | - | |
HCH13g1292 | 206 | MobiDBLite | consensus disorder prediction | 187 | 206 | - | - | |
HCH13g1292 | 206 | PANTHER | RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED | 17 | 196 | IPR052788 | - | |
HCH13g1292 | 206 | CDD | RING-H2_EL5-like | 113 | 156 | - | - | |
HCH13g1292 | 206 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 66 | 163 | IPR013083 | - | |
HCH13g1292 | 206 | ProSiteProfiles | Zinc finger RING-type profile. | 114 | 156 | IPR001841 | - | |
HCH13g1292 | 206 | MobiDBLite | consensus disorder prediction | 190 | 206 | - | - | |
HCH13g1292 | 206 | Pfam | Ring finger domain | 113 | 156 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH13g1292 | HCH-Chr13:40915909 | HCH2g0191 | HCH-Chr2:18917349 | 3.50E-22 | dispersed | |
HCH12g0043 | HCH-Chr12:233173 | HCH13g1292 | HCH-Chr13:40915909 | 1.70E-41 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH13g1292 | - | - | - | 0.0 |