Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1292 ATGAGTCGCCACATCAGAATTCTGGCTTCCAAATCAAATAACTCAGAGCCCTCATCAGGTGCTCCAGCCCCTGAAGGAGTTGCTTTAGAATCAGACTTTGTGGTAATACTAGCTGCCTTGCTATGTGCTCTGATATGCATGGTTGGTTTAATAGCAGTGGCTCGATGTGCTTGGCTTCGTCGTGGCTCTGGACCTGGACCCAATAATTCAAACCACTCTTCTGCTAATAAAGGCCTTAAAAAGAAAACCCTTCAATCCCTTCCAAAATTCACATACACTCAAAGGCAAAGCCAAAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCAATTCAGGAGAATGTGCTATTTGTCTTGGTGAATTCTTGGAAGGAGATGAGATTAGGATGCTCCCACAGTGTGGTCATTGTTTTCATATGGGATGTGTAGATACTTGGTTGGGATCACACTCTTCTTGTCCATCTTGTCGTCAGATTCTGGTGGTTAATACTACTACTAGATGTCATAACTGCGGTCATTTACCTGCTGCTGCTGTCAATGAACAGGAACTCAAGGCAAGGGAAGATCATAATCCTGTTTCTAACAACAACAACAATAATAACAGTAGGGGTTTCTTGCCTTGA 621 44.28 MSRHIRILASKSNNSEPSSGAPAPEGVALESDFVVILAALLCALICMVGLIAVARCAWLRRGSGPGPNNSNHSSANKGLKKKTLQSLPKFTYTQRQSQSQSQSQSQSQSNSGECAICLGEFLEGDEIRMLPQCGHCFHMGCVDTWLGSHSSCPSCRQILVVNTTTRCHNCGHLPAAAVNEQELKAREDHNPVSNNNNNNNSRGFLP 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40915909 40916529 - evm.model.ptg000021l.1292 HCH13g1292 557797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1292 206 SUPERFAMILY RING/U-box 86 165 - -
HCH13g1292 206 SMART ring_2 114 155 IPR001841 -
HCH13g1292 206 MobiDBLite consensus disorder prediction 187 206 - -
HCH13g1292 206 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 17 196 IPR052788 -
HCH13g1292 206 CDD RING-H2_EL5-like 113 156 - -
HCH13g1292 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 163 IPR013083 -
HCH13g1292 206 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
HCH13g1292 206 MobiDBLite consensus disorder prediction 190 206 - -
HCH13g1292 206 Pfam Ring finger domain 113 156 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1292 HCH-Chr13:40915909 HCH2g0191 HCH-Chr2:18917349 3.50E-22 dispersed
HCH12g0043 HCH-Chr12:233173 HCH13g1292 HCH-Chr13:40915909 1.70E-41 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1292 - - - 0.0