Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH13g1311 | ATGGTTATTCAGGATGAGAACAATCCTAATAGCTTGAGCCTATCCTCTAACTTTCCTGGAATGATGGAAGTGGATGGGAGAAAGGAGATTATCCACAAAAGAAGCGCTTTGGGTCTTATTCATCATAACTTGGTTCATAAGAGATCAGCCTTAACTGGAAAACATCAACTATGTGACAAGAAGCAGTCTGTTCAAATTCATAGACCAATCACAAGGAAGTTAGCTGCCCAAATTGCCAAAACGCAGCAGCCATGCCCTCAGAATCCTAATTCCAATGGATTTGAAGTTTCTATATTTGTAGATGAAGAATGCAAGTCCTCAAAAGACCATCCAGTACCAATGTCTTTGGAAAAAGCAGAAGCAATGCCTGAGGAAGGAAACCATATGGAGGAGATTGAAATGGAAGATATAGTTGATCTAGATCCTATTGTAGATATTGATAGCTGTGATTCAAAAAATCCACTTGCAGTTGTTGATTATATTAATGATCTCTATTCCTACTACAAAAAAATGGAGAGTTTCAGCTGTGTCCCTCCTAATTATATGGCAGAACAATCTGATATTAATGAGAAGATGAGGGCTATACTAATTGATTGGCTTATTGAGGTTCATGACAAGTTTGATCTAATGAGTGAGACATTGTTTCTCACTATTAATCTCATTGATAGATTTCTAGCTAAGCAATCTGTTGTGAGAAAGAAGCTCCAATTGGTGGGGTTGGTTGCTATGCTCTTAGCTTGCAAATATGAGGAAGTTTCTGTCCCTATAGTGGGGGATTTGATACTGATATCAGACAAAGCTTACTCTAGAAAAGAAATTCTTGAGATGGAAACCTTGATGCTTAACACATTGCAGTTTAATATGTCAGTTCCAACACCATATGTTTTCTTGCAAAGATTTCTCAAAGCTGCTCAGTCTGATAAGAAGAAGCTTGAGCAGTTGTCCTTCTTCTTCACCGAGCTTTCCCTCGTAGAGAACGAAATGCTCAGGTTTACGCCGTCTCTATTAGCTGCCGCAGCGATCTACACAGCTCATTGTACTCTTTATGGCTTTGGGGAGTGGAGTAGGACTTGTGAATGGCATTCTAACTACTCAGAACAACAACTTCTAGAATGCTCAAAACTAATGGTAAGCTATCACCAAAGGGCAGGAACAGGGAAGCTAACAGGGGTTCATAGAAAGTATTCCACTTCCAAGTATGGTTTTAGTGCAAAATCTGAACCAGCATGCTTTCTCATGGAGAAGCAAATATAG | 1254 | 39.23 | MVIQDENNPNSLSLSSNFPGMMEVDGRKEIIHKRSALGLIHHNLVHKRSALTGKHQLCDKKQSVQIHRPITRKLAAQIAKTQQPCPQNPNSNGFEVSIFVDEECKSSKDHPVPMSLEKAEAMPEEGNHMEEIEMEDIVDLDPIVDIDSCDSKNPLAVVDYINDLYSYYKKMESFSCVPPNYMAEQSDINEKMRAILIDWLIEVHDKFDLMSETLFLTINLIDRFLAKQSVVRKKLQLVGLVAMLLACKYEEVSVPIVGDLILISDKAYSRKEILEMETLMLNTLQFNMSVPTPYVFLQRFLKAAQSDKKKLEQLSFFFTELSLVENEMLRFTPSLLAAAAIYTAHCTLYGFGEWSRTCEWHSNYSEQQLLECSKLMVSYHQRAGTGKLTGVHRKYSTSKYGFSAKSEPACFLMEKQI | 417 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 41075728 | 41078356 | + | evm.model.ptg000021l.1311 | HCH13g1311 | 557816 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH13g1311 | 417 | SUPERFAMILY | Cyclin-like | 290 | 408 | IPR036915 | - | |
HCH13g1311 | 417 | PIRSF | Cyclin_A_B_D_E | 7 | 417 | IPR046965 | GO:0016538(InterPro)|GO:0044772(InterPro) | |
HCH13g1311 | 417 | SMART | cyclin_7 | 295 | 378 | IPR013763 | - | |
HCH13g1311 | 417 | SMART | cyclin_7 | 198 | 282 | IPR013763 | - | |
HCH13g1311 | 417 | CDD | CYCLIN_AtCycB-like_rpt1 | 141 | 286 | - | - | |
HCH13g1311 | 417 | FunFam | G2/mitotic-specific cyclin-1 | 279 | 404 | - | - | |
HCH13g1311 | 417 | PANTHER | CYCLINS | 141 | 396 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
HCH13g1311 | 417 | Gene3D | - | 177 | 289 | - | - | |
HCH13g1311 | 417 | CDD | CYCLIN_AtCycB-like_rpt2 | 291 | 408 | - | - | |
HCH13g1311 | 417 | ProSitePatterns | Cyclins signature. | 193 | 224 | IPR048258 | - | |
HCH13g1311 | 417 | Pfam | Cyclin, N-terminal domain | 163 | 289 | IPR006671 | - | |
HCH13g1311 | 417 | SMART | Cyclin_C_2 | 291 | 409 | IPR004367 | - | |
HCH13g1311 | 417 | SUPERFAMILY | Cyclin-like | 152 | 288 | IPR036915 | - | |
HCH13g1311 | 417 | Pfam | Cyclin, C-terminal domain | 291 | 408 | IPR004367 | - | |
HCH13g1311 | 417 | Gene3D | - | 163 | 401 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH13g0981 | HCH-Chr13:20460594 | HCH13g1311 | HCH-Chr13:41075728 | 2.40E-125 | dispersed | |
HCH13g1311 | HCH-Chr13:41075728 | HCH2g1311 | HCH-Chr2:55191893 | 5.70E-64 | dispersed | |
HCH9g0977 | HCH-Chr9:7299250 | HCH13g1311 | HCH-Chr13:41075728 | 2.00E-67 | transposed | |
HCH12g0061 | HCH-Chr12:330221 | HCH13g1311 | HCH-Chr13:41075728 | 2.20E-127 | wgd | |
HCH13g1311 | HCH-Chr13:41075728 | HCH14g0711 | HCH-Chr14:35539224 | 3.60E-151 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH13g1311 | K21777 | - | rcu:8268759 | 540.806 |