Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1311 ATGGTTATTCAGGATGAGAACAATCCTAATAGCTTGAGCCTATCCTCTAACTTTCCTGGAATGATGGAAGTGGATGGGAGAAAGGAGATTATCCACAAAAGAAGCGCTTTGGGTCTTATTCATCATAACTTGGTTCATAAGAGATCAGCCTTAACTGGAAAACATCAACTATGTGACAAGAAGCAGTCTGTTCAAATTCATAGACCAATCACAAGGAAGTTAGCTGCCCAAATTGCCAAAACGCAGCAGCCATGCCCTCAGAATCCTAATTCCAATGGATTTGAAGTTTCTATATTTGTAGATGAAGAATGCAAGTCCTCAAAAGACCATCCAGTACCAATGTCTTTGGAAAAAGCAGAAGCAATGCCTGAGGAAGGAAACCATATGGAGGAGATTGAAATGGAAGATATAGTTGATCTAGATCCTATTGTAGATATTGATAGCTGTGATTCAAAAAATCCACTTGCAGTTGTTGATTATATTAATGATCTCTATTCCTACTACAAAAAAATGGAGAGTTTCAGCTGTGTCCCTCCTAATTATATGGCAGAACAATCTGATATTAATGAGAAGATGAGGGCTATACTAATTGATTGGCTTATTGAGGTTCATGACAAGTTTGATCTAATGAGTGAGACATTGTTTCTCACTATTAATCTCATTGATAGATTTCTAGCTAAGCAATCTGTTGTGAGAAAGAAGCTCCAATTGGTGGGGTTGGTTGCTATGCTCTTAGCTTGCAAATATGAGGAAGTTTCTGTCCCTATAGTGGGGGATTTGATACTGATATCAGACAAAGCTTACTCTAGAAAAGAAATTCTTGAGATGGAAACCTTGATGCTTAACACATTGCAGTTTAATATGTCAGTTCCAACACCATATGTTTTCTTGCAAAGATTTCTCAAAGCTGCTCAGTCTGATAAGAAGAAGCTTGAGCAGTTGTCCTTCTTCTTCACCGAGCTTTCCCTCGTAGAGAACGAAATGCTCAGGTTTACGCCGTCTCTATTAGCTGCCGCAGCGATCTACACAGCTCATTGTACTCTTTATGGCTTTGGGGAGTGGAGTAGGACTTGTGAATGGCATTCTAACTACTCAGAACAACAACTTCTAGAATGCTCAAAACTAATGGTAAGCTATCACCAAAGGGCAGGAACAGGGAAGCTAACAGGGGTTCATAGAAAGTATTCCACTTCCAAGTATGGTTTTAGTGCAAAATCTGAACCAGCATGCTTTCTCATGGAGAAGCAAATATAG 1254 39.23 MVIQDENNPNSLSLSSNFPGMMEVDGRKEIIHKRSALGLIHHNLVHKRSALTGKHQLCDKKQSVQIHRPITRKLAAQIAKTQQPCPQNPNSNGFEVSIFVDEECKSSKDHPVPMSLEKAEAMPEEGNHMEEIEMEDIVDLDPIVDIDSCDSKNPLAVVDYINDLYSYYKKMESFSCVPPNYMAEQSDINEKMRAILIDWLIEVHDKFDLMSETLFLTINLIDRFLAKQSVVRKKLQLVGLVAMLLACKYEEVSVPIVGDLILISDKAYSRKEILEMETLMLNTLQFNMSVPTPYVFLQRFLKAAQSDKKKLEQLSFFFTELSLVENEMLRFTPSLLAAAAIYTAHCTLYGFGEWSRTCEWHSNYSEQQLLECSKLMVSYHQRAGTGKLTGVHRKYSTSKYGFSAKSEPACFLMEKQI 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41075728 41078356 + evm.model.ptg000021l.1311 HCH13g1311 557816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1311 417 SUPERFAMILY Cyclin-like 290 408 IPR036915 -
HCH13g1311 417 PIRSF Cyclin_A_B_D_E 7 417 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
HCH13g1311 417 SMART cyclin_7 295 378 IPR013763 -
HCH13g1311 417 SMART cyclin_7 198 282 IPR013763 -
HCH13g1311 417 CDD CYCLIN_AtCycB-like_rpt1 141 286 - -
HCH13g1311 417 FunFam G2/mitotic-specific cyclin-1 279 404 - -
HCH13g1311 417 PANTHER CYCLINS 141 396 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
HCH13g1311 417 Gene3D - 177 289 - -
HCH13g1311 417 CDD CYCLIN_AtCycB-like_rpt2 291 408 - -
HCH13g1311 417 ProSitePatterns Cyclins signature. 193 224 IPR048258 -
HCH13g1311 417 Pfam Cyclin, N-terminal domain 163 289 IPR006671 -
HCH13g1311 417 SMART Cyclin_C_2 291 409 IPR004367 -
HCH13g1311 417 SUPERFAMILY Cyclin-like 152 288 IPR036915 -
HCH13g1311 417 Pfam Cyclin, C-terminal domain 291 408 IPR004367 -
HCH13g1311 417 Gene3D - 163 401 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0981 HCH-Chr13:20460594 HCH13g1311 HCH-Chr13:41075728 2.40E-125 dispersed
HCH13g1311 HCH-Chr13:41075728 HCH2g1311 HCH-Chr2:55191893 5.70E-64 dispersed
HCH9g0977 HCH-Chr9:7299250 HCH13g1311 HCH-Chr13:41075728 2.00E-67 transposed
HCH12g0061 HCH-Chr12:330221 HCH13g1311 HCH-Chr13:41075728 2.20E-127 wgd
HCH13g1311 HCH-Chr13:41075728 HCH14g0711 HCH-Chr14:35539224 3.60E-151 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1311 K21777 - rcu:8268759 540.806