Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1320 ATGGCTATTGATGTTGAAGAAGAAGATGTCGAGAGCTGTGGTAGTAGACCTTCTCTCTCCACCTTTCAAGCAAATCCTCGCCAAAACAGGCAAAAGCTTGATGTTTATAATGAAGTTCTTCGTCGAATCCAAGAATCCGATTTTCAAGAAGCTGTTCTTCCTGATTTTTATCATCACCTTTGGCTCCATTTCGATCGTCTTCCTCTTCGGTATGCATTGGATGTGAATGTTGATAGGGCGGAGGATGTACTTACGCATAAGAGATTACTTCAATTGGCTCTAGATCCTGCTAATCGACCTGCGTTTGAAGTTCGTCCCGTGCAGGTTTATCCTTCTACCCATGGAAACTGTATCGATTCTTTCCATTCAGATTCTTCAATGATGGAAGATGCTCAGAGCTCTTTTAATGATTCTAACAGACAGGGGAACCATCCGCCGCCCACTTTTGGTTCTTCACCTAACCTTGAAGCATTTGCATTTCAAGCCAGCAAATATAATATTGAAGATAGAGACAGTGCCCTAAATGCAACACCCTGCTTTTCTCGGCCAATGCATGAGATCACATTTGCAACAAATGACAAGCCTAAACTTCTTAGTCAGTTAACTTCGCTACTTGCTGATGTTGGACTTAACATACAAGAAGCTCATGCTTTCTCCTCTGTTGACGGCTTCTCTCTTGATGTTTTTGTCATTGATGGTTGGCCATATGAGGAAACTGAGGAGCTTAAAAGTGCAATAGAAAAAGAAATTTTAAAATTTAAGGAGCAATTTTGGTCACAAAAGCGATCAAGTCCTGCTGTGGGTAAGCAAAACCAGAATAGAGTCGAGTCTTTTCCTAGTTGTGTTGAAATACCTACTGATGGTACTGATGTCTGGGAAATTGACACCAGACAGCTAAAACTTGAGAATAAAGTTGGATCTGGGTCATATGGGGACCTGTATCGGGGCACGTATTGTAGTCAGGAAGTGGCTATTAAAGTATTGCGGCCTGAGCGTATTAATGGAGAGATGCTGAAAGAATTCTCTCAAGAAGTTTATATAATGAGGAAAGTTCGGCACAAAAATGTTGTTCAATTTATCGGTGCTTGTACCAAACCTCCAAACCTATGCATCGTGACGGAGTTTATGTCGAGAGGAAGCTTATATGACTTCCTTCATAAGCAAAGAGGCTCTTTTAACCTTCCATCTTTAGTTAAAGTAGCTATTGACATTTCAAGAGGAATGAATTATTTGCACCAAAATAATATAATCCATCGTGATCTAAAGACTGCCAATCTTCTGATGGATGAAAACATGGTTATTAAGGTTGCTGATTTTGGAGTTGCAAGAGTCCAAACACAATCTGGAGTGATGACAGCTGAAACGGGAACATACCGGTGGATGGCTCCTGAAGTCATTGAGCATAAACCATATGATCATAAGGCAGATGTTTTCAGTTTTGGAATAGCCTTATGGGAGCTTTTAACTGGAGAAATTCCATATTCATACTTGACCCCATTACAAGCAGCCGTCGGTGTAGTCCAGAAGATGCTACGGCCTACAATTCCCAAGACTGCTCATCCCATTCTTGCAGAACTACTTGAAAGATGCTGGCTACAGGATCCAACCGAAAGACCAAACTTCTCTGAAATTTTGGACATCCTCAAGCCGATAGCTGAGCAGATTGAAAATAATGGGGAACATCGACGCAAGAAGGATAAATTATCCGGTGGGTTCTTCTCAGCACTCAGAAGGGGGCATCACTGA 1746 41.47 MAIDVEEEDVESCGSRPSLSTFQANPRQNRQKLDVYNEVLRRIQESDFQEAVLPDFYHHLWLHFDRLPLRYALDVNVDRAEDVLTHKRLLQLALDPANRPAFEVRPVQVYPSTHGNCIDSFHSDSSMMEDAQSSFNDSNRQGNHPPPTFGSSPNLEAFAFQASKYNIEDRDSALNATPCFSRPMHEITFATNDKPKLLSQLTSLLADVGLNIQEAHAFSSVDGFSLDVFVIDGWPYEETEELKSAIEKEILKFKEQFWSQKRSSPAVGKQNQNRVESFPSCVEIPTDGTDVWEIDTRQLKLENKVGSGSYGDLYRGTYCSQEVAIKVLRPERINGEMLKEFSQEVYIMRKVRHKNVVQFIGACTKPPNLCIVTEFMSRGSLYDFLHKQRGSFNLPSLVKVAIDISRGMNYLHQNNIIHRDLKTANLLMDENMVIKVADFGVARVQTQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIALWELLTGEIPYSYLTPLQAAVGVVQKMLRPTIPKTAHPILAELLERCWLQDPTERPNFSEILDILKPIAEQIENNGEHRRKKDKLSGGFFSALRRGHH 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41142912 41149021 - evm.model.ptg000021l.1320 HCH13g1320 557825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1320 581 FunFam Serine/threonine-protein kinase isoform 1 289 377 - -
HCH13g1320 581 SMART serkin_6 299 552 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g1320 581 SUPERFAMILY Protein kinase-like (PK-like) 274 548 IPR011009 -
HCH13g1320 581 PRINTS Tyrosine kinase catalytic domain signature 456 466 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g1320 581 PRINTS Tyrosine kinase catalytic domain signature 373 386 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g1320 581 PRINTS Tyrosine kinase catalytic domain signature 519 541 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g1320 581 PRINTS Tyrosine kinase catalytic domain signature 410 428 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g1320 581 PRINTS Tyrosine kinase catalytic domain signature 475 497 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g1320 581 ProSiteProfiles Protein kinase domain profile. 299 552 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH13g1320 581 MobiDBLite consensus disorder prediction 1 24 - -
HCH13g1320 581 Gene3D Transferase(Phosphotransferase) domain 1 378 571 - -
HCH13g1320 581 FunFam serine/threonine-protein kinase HT1 378 569 - -
HCH13g1320 581 SUPERFAMILY ACT-like 184 250 IPR045865 -
HCH13g1320 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g1320 581 CDD STKc_MAP3K-like 305 548 - -
HCH13g1320 581 MobiDBLite consensus disorder prediction 129 151 - -
HCH13g1320 581 CDD ACT_TyrKc 184 251 - -
HCH13g1320 581 Gene3D Phosphorylase Kinase; domain 1 289 377 - -
HCH13g1320 581 ProSitePatterns Protein kinases ATP-binding region signature. 305 326 IPR017441 GO:0005524(InterPro)
HCH13g1320 581 Coils Coil 236 256 - -
HCH13g1320 581 Pfam Protein tyrosine and serine/threonine kinase 299 547 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH13g1320 581 PANTHER SERINE-THREONINE PROTEIN KINASE 138 550 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
HCH13g1320 581 ProSiteProfiles ACT domain profile. 186 265 IPR002912 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0473 HCH-Chr12:2780971 HCH13g1320 HCH-Chr13:41142912 9.60E-46 dispersed
HCH13g0225 HCH-Chr13:1470369 HCH13g1320 HCH-Chr13:41142912 5.80E-141 dispersed
HCH13g1320 HCH-Chr13:41142912 HCH7g0439 HCH-Chr7:3248409 8.30E-231 dispersed
HCH2g0899 HCH-Chr2:52483724 HCH13g1320 HCH-Chr13:41142912 6.70E-42 dispersed
HCH12g0092 HCH-Chr12:490808 HCH13g1320 HCH-Chr13:41142912 1.90E-184 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81208 PF07714 PK_Tyr_Ser-Thr 1.30E-72 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1320 - - - 0.0