Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1327 ATGGATTTTATTGCTAACCCATTTCGATTTCCTTCATCTTCGTCGCCATCGTTTGGGAGTTTTATTGAGAGAATTAAAGAAATCTTCTGTTATGCTGTTTCTGCAATTATTGGGAATATTTTGTCTGCAATTTTCACCTTCTTCTTTGCCCTAGTGGGCACTTTGCTGGGAGCTATGACTGGAGCATTGATAGGTCAAGAGACAGAGAGTGGATTTGTAAGAGGAGCTGCTGTTGGAGCCATTTCTGGAGCTGTTTTTTCAATTGAAGTCTTTGAATCTTCCCTTGTTCTTTGGCAATCTGATGAATCTGGGATTGGCTGTCTTCTTTATTTGATTGATGTCATTGCAAGCCTCCTGAGTGGGAGACTAGTTCGCGAACGGATCGGTCCGGCCATATTAAGTGCAGTTCAAAGTCAGATGGGTGCCGTGGAGACGAGCTTTGACGATATCCCGAACATCTTCGATACCGGCAGTGCCAAAGGGTTGCCTGGAGACTCCGTCGAGAAAATTCCAAAGATCATGATAACTAAAAACAACAGTATGGATGCTTATGGAGAGAGAGTTTGTTGCTCAGTCTGTCTTCAGGACTTCCAGCTTGGAGAGACTGTGAGAAGCTTACCATATTGCCATCACATGTTTCACTTGCCCTGTATTGATAAGTGGCTTCTTACTCATGGCTCTTGCCCTTTATGTAGAAGGGATCTGTGA 708 43.64 MDFIANPFRFPSSSSPSFGSFIERIKEIFCYAVSAIIGNILSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAILSAVQSQMGAVETSFDDIPNIFDTGSAKGLPGDSVEKIPKIMITKNNSMDAYGERVCCSVCLQDFQLGETVRSLPYCHHMFHLPCIDKWLLTHGSCPLCRRDL 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41192506 41193826 + evm.model.ptg000021l.1327 HCH13g1327 557832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1327 235 Pfam Ring finger domain 190 232 IPR001841 -
HCH13g1327 235 SMART ring_2 190 231 IPR001841 -
HCH13g1327 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 235 IPR013083 -
HCH13g1327 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 22 234 IPR044523 -
HCH13g1327 235 FunFam NEP1-interacting protein-like 1 150 235 - -
HCH13g1327 235 Pfam YMGG-like Gly-zipper 50 85 IPR027367 -
HCH13g1327 235 CDD RING-H2_NIPL1-like 189 232 - -
HCH13g1327 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
HCH13g1327 235 SUPERFAMILY RING/U-box 176 235 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1327 HCH-Chr13:41192506 HCH8g1286 HCH-Chr8:47997464 2.10E-31 dispersed
HCH13g1327 HCH-Chr13:41192506 HCH6g1379 HCH-Chr6:47714426 3.60E-15 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1327 - - - 0.0