Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1328 ATGTTATCAAGGTTGATGAACTTTCTGAGGGCCTGCTGGCAGCCATCTGCTGATCGTTACGCTCATCGGGGCGGTTCGGATTCAGTTGGCTGTCAAGAAGGGTTGCTTTGGTACAGGGACAGTGGGCAGCACATAAATGGAGAGTTTTCAATGGCTGTTGTACAGGCCAATAATTTACTTGAGGATCAGAGCCAGATTGAGTCTGGTCCCTTGAGCTTTCTCGAGTCTGGACCGTATGGAACCTTTGTAGGAATATACGATGGGCATGGAGGACCTGAGACGTCACGTTATATATGCGATAATTTATTCCAGCATCTCAAAGCATTTGCCACAGAAGAAAAGTCAATGTCAGTGGATGTGATAAAGAAAGCATTTCAAGCAACAGAGGATGGTTTTCTATCTATTGTCACCAAACAATGGCCTACAAATCCCCAAATTGCGGCCGTTGGTTCTTGCTGTCTGGTTGGTGTGGTTTGTGGTGGTACACTTTACATTGCTAACCTTGGTGATTCCCGGGCTGTGTTGGGAAGGCTTGTACAGGCCACCGGGGAAGTTCTTCCCATTCAGCTATCAGCCGAGCACAATGCGAGCATCGAATCTGTCCGCCAGGAGATGCATTCTTTGCACCCAGATGATTCCAAGATAGTTGTTTTGAAGCATAATGTATGGCGTGTAAAGGGCTTGATTCAGATTTCCAGATCCATAGGAGATGTGTATCTTAAAAAGCCTGAATTTAACCGGGAGCCTTTGTATGCTAAGTTTCGCCTTCGAGAACCCTTCAGTAGGCCTATTTTGAGCTCTGAACCAGCAATATCTGTGCACGAACTTGATCCTCATGATCAATTCCTCGTATTTGCTTCCGATGGGCTGTGGGAGCACCTTAGCAATCAGGATGCAGTTGATATCGTTCAGAAGCATCCTCGCAGTGGAAGTGCAAGAAGACTAGTTAAAGCAGCCATGCAGGAAGCAGCTAAGAAGCGAGAAATGCGATATTCAGATTTGAAGAAAATAGACCGCGGTGTTCGTCGTCATTTTCACGATGACATAACTGTCATAGTCGTGTTTCTTGATTCGAACTTGGTGAGCAAAGCCAGCAGTGGAGCAGTACGCTGCCCGGTATTGTCTGTAAGAGGGGGTGGTGTACATCTACCTGCAAAGTCTCTGGCCCCCTGTTCTATACCTTCAGAACTCAACACTGTCCCAGGATGA 1209 46.73 MLSRLMNFLRACWQPSADRYAHRGGSDSVGCQEGLLWYRDSGQHINGEFSMAVVQANNLLEDQSQIESGPLSFLESGPYGTFVGIYDGHGGPETSRYICDNLFQHLKAFATEEKSMSVDVIKKAFQATEDGFLSIVTKQWPTNPQIAAVGSCCLVGVVCGGTLYIANLGDSRAVLGRLVQATGEVLPIQLSAEHNASIESVRQEMHSLHPDDSKIVVLKHNVWRVKGLIQISRSIGDVYLKKPEFNREPLYAKFRLREPFSRPILSSEPAISVHELDPHDQFLVFASDGLWEHLSNQDAVDIVQKHPRSGSARRLVKAAMQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSNLVSKASSGAVRCPVLSVRGGGVHLPAKSLAPCSIPSELNTVPG 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41196164 41198747 - evm.model.ptg000021l.1328 HCH13g1328 557833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1328 402 ProSiteProfiles PPM-type phosphatase domain profile. 48 356 IPR001932 -
HCH13g1328 402 SUPERFAMILY PP2C-like 57 357 IPR036457 -
HCH13g1328 402 PANTHER PROTEIN PHOSPHATASE 40 355 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH13g1328 402 FunFam Phosphatase 2C family protein 37 366 - -
HCH13g1328 402 SMART PP2C_4 38 354 IPR001932 -
HCH13g1328 402 Gene3D - 38 366 IPR036457 -
HCH13g1328 402 ProSitePatterns PPM-type phosphatase domain signature. 82 90 IPR000222 GO:0043169(InterPro)
HCH13g1328 402 CDD PP2Cc 49 356 IPR001932 -
HCH13g1328 402 Pfam Protein phosphatase 2C 81 325 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1328 HCH-Chr13:41196164 HCH2g0571 HCH-Chr2:49532998 6.20E-185 dispersed
HCH6g1755 HCH-Chr6:50026499 HCH13g1328 HCH-Chr13:41196164 3.10E-117 transposed
HCH13g1328 HCH-Chr13:41196164 HCH14g0682 HCH-Chr14:35329750 5.60E-186 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1328 K01102 - cit:102615075 667.922