Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1345 ATGGCAGAAAAGGAAGAGGATACTCATTCTGAATCTTCCTCAATGAGGACTCCTTTGAGAAAAGTGTTTTGTAGGATTTCAGGTTTGGCAAATTCTTTGAGAAGGAATACTGCTCCTCATGGAAGAAGGATTTTTCATAGAGATGTTGAACAACAAGAGTTTCAATATGGAACCTCTCATTGCCTCTCATCATATTACAGTGTCTTCGTCGCCCGCCTTGCGATTATGGTCATGCTAGCAATTTTGATAGGGATGCTAACAATACTAACTTGGCATTTCACAAAGAGCTATACAGCACAGTCACTGGACAGCTTAGCTTATGGTCTTCGTCATGAATTGCTACAACGGCCTATTTTAAGGATGTGGGGTGTCTTGAATTCAACCTCTGAGATAACAACAGCACAGGTTAAGCTATCTGAGTATGTAATTAGGAAGTACAGTAAGCCTACAAATCAAGCAGAACAAGTTGAATTATATGAAGCAATGAAGGAAGTGACTTGGGCATCGTTTGCAAGTCGAAAAGCTCTTAATGCGATAACTATCAATTACAAAAATGGTTTTGTCCAGGCGTTCCATCGAGATCATAGAAGCAACAATACGTTTTATATCTACTCAGATCTTGCTAACTATTCAATTAGTGCCAGTGAATCCTACAATGTCAATAAGCTTTCATCAGGTGAAGGCTGGTCTGAACCACCTATACATGGTAATGTTTCTGCGAAATGGTTTCGTGAACCACTTGATCCTGTCAGTGGCGAGAAGATTGGGAAAGCAACACAGATACCTCCCGAAGACTTGATTAATATCGCTGGCATTTCACAATTAGCAGATGGCGTTGCTTCGTGGCATGTCACTGTGAGCAAGTACATGGATACACCATTGCTTTCAGCCGCTCTGCCTGTTTCCGATGCTTCCAATGAAAGCATAGTTGCCGTGGTGGGCGTTACTACAGCACTTTACAGTGTAGGCCAGTTGATGAAGGAACTTGTTGAATTCCACAGTGGACATATTTATTTAACCTCTCAAGAGGGCTACTTGCTTGCTACTTCGGCCAATGCACCATTGTTAACAAATACATCAAAGGGTCCAAAGCTTATGATGGCTGTTGATTCCCAGGACGATGTGATTCGATTGGGAGCTGAGTGGCTAAATAAAACCTATGGAAACAATTTTCCTCCTGGTCATGAGGTTCATGAAGAGAATGTCTGGCTTGGTGGCCAGCAATATTACATCGACTCATTTTTTCTTAATCTAAAGAGGCTTCCTATTGTGGGAGTCGTCATCATTCCTAGACGATACATAATGGGAAAGGTAGATGAGAGAGCTTTCAAAACATTGATTATACTGATTTCTGCATCCTTATGTATCTTAGTTATTGGATGTCTATGCATTTTGATTCTGACAAAAGGGGTGTCTAAGGAAATGAAACTAAGAGCAGAATTAATAAGCCATCTTGATGCAAGAAGAAGAGCAGAGGCATCTAGTAATTACAAGAGTCAATTTCTAGCGAATATGAGTCATGAGTTGAGGACTCCAATGGCTGCAGTAATTGGACTTCTGGATATTCTAATGTGTGATGACTGTCTCAATAATGAGCAATACGCTACTGTCACTCAGATTAGGAAATGCTCAACAGCTCTACTCCGGCTTCTCAACAACATTCTAGACCTAAGCAAGGTTGAATCTGGAAAGTTGGTGTTGGAAGATGCAGAGTTTGACCTAGGACGAGAACTTGAGGGGCTTGTTGATATGTTCTCTGTTCAGTGCATTAACCACAATGTGGAGACTGTCTTGGATCTCTCTGATGATATGCCAAAATTAGTTCGAGGAGACTCTGCTAGAGTTGTTCAAATATTCACAAATTTGATCAGCAATTCTATTAAATTCACAACTACTGGTCACATCGTTCTTCGTGGGTGGTGTGAGACCTCGACTACTCTTAATGAAACCGGGAAGTTTTCTGTTGATCAGAAGAAATCACGGTTTCCTAATCGGACAAAGATGAAACAACAAGGAGACCACACAAAGAATGCCTGCAAGAAAGATAACAAGATGACCTTGTGGTTTGAACTCGATGACACTGGCTGCGGGATTGATCCAAGCAAATGGGAATCTGTCTTTGAAAGCTTTGAGCAAGCAGATCCTTCAACAACCCGAACGCATGGTGGCACTGGTCTTGGACTGTGCATTGTACGTACATTGATTAACAAGATGGGTGGAGAAATAAAGGTTGTAAAGAAGAACGGCCCGGGAACTTTGATGAGACTTTACTTGGTTCTCAACACACCTGTAGACTACACAGATCAACATTGTCAACTTGATTTTGCAAAACATAATATAGTGGTACTGCTTGCACTGCGAGGAAGCATGAGTCGATTAACCATGTCGCAATGGCTTCGGAAAATTGGACTAGTCACTCTAGAAGCTTCAGAGTGGAATGAACTGACACTAATCCTTCAGGAACTCTTTCAAGCTAGAAGTTCAGAAATGAATAAGGGATATAGTCCACAGGATTCACTAAGTGGACCGTTAAGAGCCGAGTTTCTGAGAATTCAAGATATGAGAAGTCGTACATTCATTATTGTTGTTGATATAGGGATACTTGACTTGAGCACGGATATCTGGAAGGAGCAACTCTACTTCCTTGACAAATACTCTGGAAAAGCAAAATTTGCATGGATGCTAAATCACGATACCTCCAATGCAATGAAGATGGAACTCCGTGGAAAAGGGCATATTATATTGAACAATAAACCACTATACAAAGCAAAAATGATTCATATATTTGAAGCTGTTATGAAGGACAGAAATCTCGAACTGCTGAAGAAAAGTGCTTCAAGAACTACGTCGAAAGAAGGGGATTATCATGAATGTCTTGAAATTGATTCAACTCAATTTGATACTGCAAGCTCTGCTGATTCTGATGTTTCTGAAATTGGCAACTCCGACCCTCAATGCGCAACATTTCAAGTTGGCGACGATCAAGGAGAGAATAGAACGAAACCATGTCAATCACCGTTCCAGGCTGTTAGCAGTAGCTTAGTTGAATTAACTCATATACATTCAGACGGAAGTAATTTGAGGACCGATAATTCAAGTCACGGTAGGAAAAATTCAATCGGTGTTGCATATGAAAATCCTAAATCCGAGTGTGTCAAACAAGAATCTCTCCCTAGAAAGCCTCAATGTGGTTCTGAATGTGATGGACAAAACTGGGCATGCAACTATCCTAAAGTTCAAGGAGAGTCTCATTCCAAGGCCATCCATCGGCAGAAATCTCTCGAAGGACTACGCATCTTGCTTGCAGAAGATACGCCAGTTCTCCAAAGAGTAACAACCATAATGCTAGAGAAAATGGGAGCAACGGTCATTGCTGTGGGCGATGGATTGATGGCTGTAGAGGCTCTGAATTCCATGCTCAATGTAGAAGAGCTCAGAAGGGAATGTCTCACAAGATATGACTTGGTCTTAATGGATTGCCAAATGCCAAAGATGGATGGCTATGAAGCAACAAAAGCAATTAGAAAATTAGAAGTGGGAACAAACTTTCACATCCCCATTGTAGCATTGACAGCCCATGCAATGTCATCAGATGAAGCCAAATGCTTAGAGGTGGGCATGGATGCATACTTGACAAAGCCAATTGACTATAAGCTTATGGTATCAACTATCCTCTCACTCACTAAAAGAAGAGCCTGA 3699 41.17 MAEKEEDTHSESSSMRTPLRKVFCRISGLANSLRRNTAPHGRRIFHRDVEQQEFQYGTSHCLSSYYSVFVARLAIMVMLAILIGMLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWGVLNSTSEITTAQVKLSEYVIRKYSKPTNQAEQVELYEAMKEVTWASFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLANYSISASESYNVNKLSSGEGWSEPPIHGNVSAKWFREPLDPVSGEKIGKATQIPPEDLINIAGISQLADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLTNTSKGPKLMMAVDSQDDVIRLGAEWLNKTYGNNFPPGHEVHEENVWLGGQQYYIDSFFLNLKRLPIVGVVIIPRRYIMGKVDERAFKTLIILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQYATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSARVVQIFTNLISNSIKFTTTGHIVLRGWCETSTTLNETGKFSVDQKKSRFPNRTKMKQQGDHTKNACKKDNKMTLWFELDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLINKMGGEIKVVKKNGPGTLMRLYLVLNTPVDYTDQHCQLDFAKHNIVVLLALRGSMSRLTMSQWLRKIGLVTLEASEWNELTLILQELFQARSSEMNKGYSPQDSLSGPLRAEFLRIQDMRSRTFIIVVDIGILDLSTDIWKEQLYFLDKYSGKAKFAWMLNHDTSNAMKMELRGKGHIILNNKPLYKAKMIHIFEAVMKDRNLELLKKSASRTTSKEGDYHECLEIDSTQFDTASSADSDVSEIGNSDPQCATFQVGDDQGENRTKPCQSPFQAVSSSLVELTHIHSDGSNLRTDNSSHGRKNSIGVAYENPKSECVKQESLPRKPQCGSECDGQNWACNYPKVQGESHSKAIHRQKSLEGLRILLAEDTPVLQRVTTIMLEKMGATVIAVGDGLMAVEALNSMLNVEELRRECLTRYDLVLMDCQMPKMDGYEATKAIRKLEVGTNFHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTKRRA 1232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41323292 41330328 - evm.model.ptg000021l.1345 HCH13g1345 557850

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1345 1232 CDD REC_hyHK_CKI1_RcsC-like 1099 1224 - -
HCH13g1345 1232 Pfam Response regulator receiver domain 1099 1223 IPR001789 GO:0000160(InterPro)
HCH13g1345 1232 PRINTS Bacterial sensor protein C-terminal signature 705 715 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH13g1345 1232 PRINTS Bacterial sensor protein C-terminal signature 687 701 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH13g1345 1232 PRINTS Bacterial sensor protein C-terminal signature 722 740 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH13g1345 1232 FunFam Histidine kinase 1-like protein 485 564 - -
HCH13g1345 1232 Pfam His Kinase A (phospho-acceptor) domain 498 563 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH13g1345 1232 Gene3D - 485 564 - -
HCH13g1345 1232 SMART REC_2 1097 1224 IPR001789 GO:0000160(InterPro)
HCH13g1345 1232 ProSiteProfiles Histidine kinase domain profile. 504 762 IPR005467 -
HCH13g1345 1232 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 485 564 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH13g1345 1232 Gene3D - 565 763 IPR036890 -
HCH13g1345 1232 Gene3D - 1076 1230 - -
HCH13g1345 1232 PANTHER TWO-COMPONENT HISTIDINE KINASE 60 766 IPR050736 -
HCH13g1345 1232 SMART HKATPase_4 610 762 IPR003594 -
HCH13g1345 1232 SUPERFAMILY CheY-like 1095 1230 IPR011006 -
HCH13g1345 1232 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 552 758 IPR036890 -
HCH13g1345 1232 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 610 759 IPR003594 -
HCH13g1345 1232 CDD HisKA 498 559 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH13g1345 1232 ProSiteProfiles Response regulatory domain profile. 1098 1228 IPR001789 GO:0000160(InterPro)
HCH13g1345 1232 SMART HisKA_10 497 563 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1345 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1345 HCH-Chr13:41323292 HCH4g1074 HCH-Chr4:6947979 1.10E-62 dispersed
HCH13g1345 HCH-Chr13:41323292 HCH2g0666 HCH-Chr2:50453017 4.10E-38 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH13g1345 . 3 1232 Histidine Kinase Gene Family AT2G17820 63.6 0.0e+00 1460.3
HCH1g0075 . 18 991 Histidine Kinase Gene Family AT2G01830 72.6 0.0e+00 1352.4
HCH10g1380 . 20 985 Histidine Kinase Gene Family AT2G01830 72.1 0.0e+00 1323.9
HCH7g0328 . 278 1230 Histidine Kinase Gene Family AT2G01830 53.6 9.0e-276 946.8
HCH10g0077 . 58 1008 Histidine Kinase Gene Family AT2G01830 53.2 1.3e-274 943.0
HCH2g0666 . 287 1240 Histidine Kinase Gene Family AT2G01830 52.7 4.1e-268 921.4
HCH12g0444 . 1 987 Histidine Kinase Gene Family AT5G10720 58.5 1.4e-296 1015.8
HCH8g0009 . 1 1122 Histidine Kinase Gene Family AT1G09570 78.6 0.0e+00 1788.9
HCH7g0347 . 13 1111 Histidine Kinase Gene Family AT1G09570 54.6 0.0e+00 1209.9
HCH7g1026 . 41 1127 Histidine Kinase Gene Family AT1G09570 54.2 0.0e+00 1189.1
HCH7g1026 . 37 1068 Histidine Kinase Gene Family AT2G18790 79.3 0.0e+00 1662.5
HCH3g0755 . 10 1023 Histidine Kinase Gene Family AT2G18790 58.8 0.0e+00 1216.8
HCH7g0347 . 27 1068 Histidine Kinase Gene Family AT2G18790 52.6 1.1e-311 1066.2
HCH8g0009 . 21 1056 Histidine Kinase Gene Family AT2G18790 51.5 1.6e-310 1062.4
HCH7g0347 . 20 1115 Histidine Kinase Gene Family AT5G35840 63.1 0.0e+00 1389.0
HCH7g1026 . 41 1129 Histidine Kinase Gene Family AT5G35840 52.9 0.0e+00 1149.0
HCH8g0009 . 9 1116 Histidine Kinase Gene Family AT5G35840 51.2 0.0e+00 1107.8
HCH7g1026 . 37 1129 Histidine Kinase Gene Family AT4G16250 76.6 0.0e+00 1700.3
HCH3g0755 . 10 1095 Histidine Kinase Gene Family AT4G16250 57.0 0.0e+00 1252.7
HCH8g0009 . 8 1117 Histidine Kinase Gene Family AT4G16250 51.5 0.0e+00 1120.5
HCH7g0347 . 19 1114 Histidine Kinase Gene Family AT4G16250 52.3 0.0e+00 1114.0
HCH3g0755 . 24 1109 Histidine Kinase Gene Family AT4G18130 61.6 0.0e+00 1335.1
HCH7g1026 . 45 1127 Histidine Kinase Gene Family AT4G18130 58.8 0.0e+00 1270.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005785 2 0 2 1 2 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32878 PF02518 HATPase_c 1.60E-22 CL0025 HCH TR