Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1345 ATGGCAGAAAAGGAAGAGGATACTCATTCTGAATCTTCCTCAATGAGGACTCCTTTGAGAAAAGTGTTTTGTAGGATTTCAGGTTTGGCAAATTCTTTGAGAAGGAATACTGCTCCTCATGGAAGAAGGATTTTTCATAGAGATGTTGAACAACAAGAGTTTCAATATGGAACCTCTCATTGCCTCTCATCATATTACAGTGTCTTCGTCGCCCGCCTTGCGATTATGGTCATGCTAGCAATTTTGATAGGGATGCTAACAATACTAACTTGGCATTTCACAAAGAGCTATACAGCACAGTCACTGGACAGCTTAGCTTATGGTCTTCGTCATGAATTGCTACAACGGCCTATTTTAAGGATGTGGGGTGTCTTGAATTCAACCTCTGAGATAACAACAGCACAGGTTAAGCTATCTGAGTATGTAATTAGGAAGTACAGTAAGCCTACAAATCAAGCAGAACAAGTTGAATTATATGAAGCAATGAAGGAAGTGACTTGGGCATCGTTTGCAAGTCGAAAAGCTCTTAATGCGATAACTATCAATTACAAAAATGGTTTTGTCCAGGCGTTCCATCGAGATCATAGAAGCAACAATACGTTTTATATCTACTCAGATCTTGCTAACTATTCAATTAGTGCCAGTGAATCCTACAATGTCAATAAGCTTTCATCAGGTGAAGGCTGGTCTGAACCACCTATACATGGTAATGTTTCTGCGAAATGGTTTCGTGAACCACTTGATCCTGTCAGTGGCGAGAAGATTGGGAAAGCAACACAGATACCTCCCGAAGACTTGATTAATATCGCTGGCATTTCACAATTAGCAGATGGCGTTGCTTCGTGGCATGTCACTGTGAGCAAGTACATGGATACACCATTGCTTTCAGCCGCTCTGCCTGTTTCCGATGCTTCCAATGAAAGCATAGTTGCCGTGGTGGGCGTTACTACAGCACTTTACAGTGTAGGCCAGTTGATGAAGGAACTTGTTGAATTCCACAGTGGACATATTTATTTAACCTCTCAAGAGGGCTACTTGCTTGCTACTTCGGCCAATGCACCATTGTTAACAAATACATCAAAGGGTCCAAAGCTTATGATGGCTGTTGATTCCCAGGACGATGTGATTCGATTGGGAGCTGAGTGGCTAAATAAAACCTATGGAAACAATTTTCCTCCTGGTCATGAGGTTCATGAAGAGAATGTCTGGCTTGGTGGCCAGCAATATTACATCGACTCATTTTTTCTTAATCTAAAGAGGCTTCCTATTGTGGGAGTCGTCATCATTCCTAGACGATACATAATGGGAAAGGTAGATGAGAGAGCTTTCAAAACATTGATTATACTGATTTCTGCATCCTTATGTATCTTAGTTATTGGATGTCTATGCATTTTGATTCTGACAAAAGGGGTGTCTAAGGAAATGAAACTAAGAGCAGAATTAATAAGCCATCTTGATGCAAGAAGAAGAGCAGAGGCATCTAGTAATTACAAGAGTCAATTTCTAGCGAATATGAGTCATGAGTTGAGGACTCCAATGGCTGCAGTAATTGGACTTCTGGATATTCTAATGTGTGATGACTGTCTCAATAATGAGCAATACGCTACTGTCACTCAGATTAGGAAATGCTCAACAGCTCTACTCCGGCTTCTCAACAACATTCTAGACCTAAGCAAGGTTGAATCTGGAAAGTTGGTGTTGGAAGATGCAGAGTTTGACCTAGGACGAGAACTTGAGGGGCTTGTTGATATGTTCTCTGTTCAGTGCATTAACCACAATGTGGAGACTGTCTTGGATCTCTCTGATGATATGCCAAAATTAGTTCGAGGAGACTCTGCTAGAGTTGTTCAAATATTCACAAATTTGATCAGCAATTCTATTAAATTCACAACTACTGGTCACATCGTTCTTCGTGGGTGGTGTGAGACCTCGACTACTCTTAATGAAACCGGGAAGTTTTCTGTTGATCAGAAGAAATCACGGTTTCCTAATCGGACAAAGATGAAACAACAAGGAGACCACACAAAGAATGCCTGCAAGAAAGATAACAAGATGACCTTGTGGTTTGAACTCGATGACACTGGCTGCGGGATTGATCCAAGCAAATGGGAATCTGTCTTTGAAAGCTTTGAGCAAGCAGATCCTTCAACAACCCGAACGCATGGTGGCACTGGTCTTGGACTGTGCATTGTACGTACATTGATTAACAAGATGGGTGGAGAAATAAAGGTTGTAAAGAAGAACGGCCCGGGAACTTTGATGAGACTTTACTTGGTTCTCAACACACCTGTAGACTACACAGATCAACATTGTCAACTTGATTTTGCAAAACATAATATAGTGGTACTGCTTGCACTGCGAGGAAGCATGAGTCGATTAACCATGTCGCAATGGCTTCGGAAAATTGGACTAGTCACTCTAGAAGCTTCAGAGTGGAATGAACTGACACTAATCCTTCAGGAACTCTTTCAAGCTAGAAGTTCAGAAATGAATAAGGGATATAGTCCACAGGATTCACTAAGTGGACCGTTAAGAGCCGAGTTTCTGAGAATTCAAGATATGAGAAGTCGTACATTCATTATTGTTGTTGATATAGGGATACTTGACTTGAGCACGGATATCTGGAAGGAGCAACTCTACTTCCTTGACAAATACTCTGGAAAAGCAAAATTTGCATGGATGCTAAATCACGATACCTCCAATGCAATGAAGATGGAACTCCGTGGAAAAGGGCATATTATATTGAACAATAAACCACTATACAAAGCAAAAATGATTCATATATTTGAAGCTGTTATGAAGGACAGAAATCTCGAACTGCTGAAGAAAAGTGCTTCAAGAACTACGTCGAAAGAAGGGGATTATCATGAATGTCTTGAAATTGATTCAACTCAATTTGATACTGCAAGCTCTGCTGATTCTGATGTTTCTGAAATTGGCAACTCCGACCCTCAATGCGCAACATTTCAAGTTGGCGACGATCAAGGAGAGAATAGAACGAAACCATGTCAATCACCGTTCCAGGCTGTTAGCAGTAGCTTAGTTGAATTAACTCATATACATTCAGACGGAAGTAATTTGAGGACCGATAATTCAAGTCACGGTAGGAAAAATTCAATCGGTGTTGCATATGAAAATCCTAAATCCGAGTGTGTCAAACAAGAATCTCTCCCTAGAAAGCCTCAATGTGGTTCTGAATGTGATGGACAAAACTGGGCATGCAACTATCCTAAAGTTCAAGGAGAGTCTCATTCCAAGGCCATCCATCGGCAGAAATCTCTCGAAGGACTACGCATCTTGCTTGCAGAAGATACGCCAGTTCTCCAAAGAGTAACAACCATAATGCTAGAGAAAATGGGAGCAACGGTCATTGCTGTGGGCGATGGATTGATGGCTGTAGAGGCTCTGAATTCCATGCTCAATGTAGAAGAGCTCAGAAGGGAATGTCTCACAAGATATGACTTGGTCTTAATGGATTGCCAAATGCCAAAGATGGATGGCTATGAAGCAACAAAAGCAATTAGAAAATTAGAAGTGGGAACAAACTTTCACATCCCCATTGTAGCATTGACAGCCCATGCAATGTCATCAGATGAAGCCAAATGCTTAGAGGTGGGCATGGATGCATACTTGACAAAGCCAATTGACTATAAGCTTATGGTATCAACTATCCTCTCACTCACTAAAAGAAGAGCCTGA 3699 41.17 MAEKEEDTHSESSSMRTPLRKVFCRISGLANSLRRNTAPHGRRIFHRDVEQQEFQYGTSHCLSSYYSVFVARLAIMVMLAILIGMLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWGVLNSTSEITTAQVKLSEYVIRKYSKPTNQAEQVELYEAMKEVTWASFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLANYSISASESYNVNKLSSGEGWSEPPIHGNVSAKWFREPLDPVSGEKIGKATQIPPEDLINIAGISQLADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLTNTSKGPKLMMAVDSQDDVIRLGAEWLNKTYGNNFPPGHEVHEENVWLGGQQYYIDSFFLNLKRLPIVGVVIIPRRYIMGKVDERAFKTLIILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQYATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSARVVQIFTNLISNSIKFTTTGHIVLRGWCETSTTLNETGKFSVDQKKSRFPNRTKMKQQGDHTKNACKKDNKMTLWFELDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLINKMGGEIKVVKKNGPGTLMRLYLVLNTPVDYTDQHCQLDFAKHNIVVLLALRGSMSRLTMSQWLRKIGLVTLEASEWNELTLILQELFQARSSEMNKGYSPQDSLSGPLRAEFLRIQDMRSRTFIIVVDIGILDLSTDIWKEQLYFLDKYSGKAKFAWMLNHDTSNAMKMELRGKGHIILNNKPLYKAKMIHIFEAVMKDRNLELLKKSASRTTSKEGDYHECLEIDSTQFDTASSADSDVSEIGNSDPQCATFQVGDDQGENRTKPCQSPFQAVSSSLVELTHIHSDGSNLRTDNSSHGRKNSIGVAYENPKSECVKQESLPRKPQCGSECDGQNWACNYPKVQGESHSKAIHRQKSLEGLRILLAEDTPVLQRVTTIMLEKMGATVIAVGDGLMAVEALNSMLNVEELRRECLTRYDLVLMDCQMPKMDGYEATKAIRKLEVGTNFHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTKRRA 1232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41323292 41330328 - evm.model.ptg000021l.1345 HCH13g1345 557850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1345 1232 CDD REC_hyHK_CKI1_RcsC-like 1099 1224 - -
HCH13g1345 1232 Pfam Response regulator receiver domain 1099 1223 IPR001789 GO:0000160(InterPro)
HCH13g1345 1232 PRINTS Bacterial sensor protein C-terminal signature 705 715 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH13g1345 1232 PRINTS Bacterial sensor protein C-terminal signature 687 701 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH13g1345 1232 PRINTS Bacterial sensor protein C-terminal signature 722 740 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH13g1345 1232 FunFam Histidine kinase 1-like protein 485 564 - -
HCH13g1345 1232 Pfam His Kinase A (phospho-acceptor) domain 498 563 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH13g1345 1232 Gene3D - 485 564 - -
HCH13g1345 1232 SMART REC_2 1097 1224 IPR001789 GO:0000160(InterPro)
HCH13g1345 1232 ProSiteProfiles Histidine kinase domain profile. 504 762 IPR005467 -
HCH13g1345 1232 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 485 564 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH13g1345 1232 Gene3D - 565 763 IPR036890 -
HCH13g1345 1232 Gene3D - 1076 1230 - -
HCH13g1345 1232 PANTHER TWO-COMPONENT HISTIDINE KINASE 60 766 IPR050736 -
HCH13g1345 1232 SMART HKATPase_4 610 762 IPR003594 -
HCH13g1345 1232 SUPERFAMILY CheY-like 1095 1230 IPR011006 -
HCH13g1345 1232 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 552 758 IPR036890 -
HCH13g1345 1232 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 610 759 IPR003594 -
HCH13g1345 1232 CDD HisKA 498 559 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH13g1345 1232 ProSiteProfiles Response regulatory domain profile. 1098 1228 IPR001789 GO:0000160(InterPro)
HCH13g1345 1232 SMART HisKA_10 497 563 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1345 HCH-Chr13:41323292 HCH4g1074 HCH-Chr4:6947979 1.10E-62 dispersed
HCH13g1345 HCH-Chr13:41323292 HCH2g0666 HCH-Chr2:50453017 4.10E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32878 PF02518 HATPase_c 1.60E-22 CL0025 HCH TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1345 - - - 0.0