Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1347 ATGGAAGAAGAAGGAAGATCCTTGGCTGAAACCCCAACATGGGCTTTTGCTACAGTCATCATTCTCATGGTCTCTCTTGGATTCTTCTTTCAAGGCACATTGAAAAGAATCAGAAAGTGGTTGGATAAGACAAAGAGAAAATCTTTACTTGCTGCTTTGGAGAAGATTAAGGAAGAGCTAATGCTTTTTGGTCTTCTGTCATTGTTGATGGGTCACTGGATTGTTTTCGTAGCGAAAATTTGTGTTCGATCTTCCGTCTTGAGTAGCCGATTCTATCCATGTGCATTGGAGATTGATTTGAAACAAGCTAAACATATTTCAATTTCAAGCCATAACTTGAACCATTCAATTTCTAGGGAGCATAATAAAGCTGGGATACGTGATTATTGTCCTGAGGGCCGTGAATCGTTTGCTTCTTATGAAAGTCTTGAGCAGCTTCATCGATTCATATTTGTTCTCGGCATCACCCATGTTTCTTATAGTTTCATCGCCATTGCATTGGCCATGATTAAGATATATGGCTGGAGAACATGGGAAAATGAAGCCAAGGCTTTGGCCATTCAGAACTTACAAGAATCTGCACAAGGACCATCCACTGGATCAAAAATAAGGCGACTGTCGACTTTCATCTTTCACCATACTTCCCATCCATGGAGTCATCACAGAGTTCTTGTTTGGCTGCTCTGTTTCAGCCGCCAGTTTTGGAGTTCGATTAACCGAAGTGATTACATGGCTCTGCGGTTGGGGTTCATCACTACTCATCAACTCCCTTTATCATACGATTTCCATAATTACATGCTTCGAAGCATGGAGGATGAATTTCGTGATATGGTTGGTATAAGTGTGCCCCTATGGATATATGCCATTTCCTGCATCTTCCTCAACTTTCATGGAAGCAATATTTACTTCTGGTTATCCTTCCTCCCAGCCATCTTGATCCTGTTGATCGGAACCAAATTGCATCGGGTAGTGGTAAAGTTGGCTGTAGAAGTAGTCGATACGTCTCCTAGGGGATATTACTATTTTAACTTAAGGGATGAGCTATTTTGGTTCAGAAAGCCAAAGCTACTTTTGTGGGTGTTACAGTTTATATCATTCCAGAATGCTTTTGAGATGGCTACATTTATTTGGTCTCTGTGGGAAATTAAGGAACCCTCTTGTTTTATGGACAACCAAACATATATTGCAATCCGCTTGACATTCGGGGTTATCACTCAATTCTGGTGTAGCTTTATTACATTCCCACTCTATGTTATAGTAACTCAGATGGGTTCGAGATTCAAGAAATCGCTCGTCTCCGAAAACGTAAGAAACTCACTTCACCAATGGAAGAGAAGAGTGAAGGCAAGGCCAAGTGTTATTCTTCTGGGTGCAACTTCACTTCCATCCTCTGTTTCTACATTGAACAACGACACTCAGCGGATCGACAACCTTGCCTTAAACTGCTCGGAAGGAAGCACATCTAGTGCCGTCCAACGCACATCCCTCTATGAGTTATTTCAGCAAGCTTCATCGAATGACAATGACGTACAATCAGCTCTTCGTTCGAGTGACGACGAACGCGATGATGATCATTAA 1578 41.7 MEEEGRSLAETPTWAFATVIILMVSLGFFFQGTLKRIRKWLDKTKRKSLLAALEKIKEELMLFGLLSLLMGHWIVFVAKICVRSSVLSSRFYPCALEIDLKQAKHISISSHNLNHSISREHNKAGIRDYCPEGRESFASYESLEQLHRFIFVLGITHVSYSFIAIALAMIKIYGWRTWENEAKALAIQNLQESAQGPSTGSKIRRLSTFIFHHTSHPWSHHRVLVWLLCFSRQFWSSINRSDYMALRLGFITTHQLPLSYDFHNYMLRSMEDEFRDMVGISVPLWIYAISCIFLNFHGSNIYFWLSFLPAILILLIGTKLHRVVVKLAVEVVDTSPRGYYYFNLRDELFWFRKPKLLLWVLQFISFQNAFEMATFIWSLWEIKEPSCFMDNQTYIAIRLTFGVITQFWCSFITFPLYVIVTQMGSRFKKSLVSENVRNSLHQWKRRVKARPSVILLGATSLPSSVSTLNNDTQRIDNLALNCSEGSTSSAVQRTSLYELFQQASSNDNDVQSALRSSDDERDDDH 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41357086 41361611 - evm.model.ptg000021l.1347 HCH13g1347 557852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1347 525 MobiDBLite consensus disorder prediction 504 525 - -
HCH13g1347 525 Pfam Mlo family 5 452 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
HCH13g1347 525 PANTHER MLO-LIKE PROTEIN 1 2 486 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0841 HCH-Chr11:39204302 HCH13g1347 HCH-Chr13:41357086 2.20E-143 dispersed
HCH13g0796 HCH-Chr13:7660504 HCH13g1347 HCH-Chr13:41357086 1.60E-103 dispersed
HCH13g1347 HCH-Chr13:41357086 HCH1g0661 HCH-Chr1:55522966 3.60E-84 dispersed
HCH13g1347 HCH-Chr13:41357086 HCH3g1261 HCH-Chr3:47585699 3.80E-81 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1347 K08472 - csv:101217051 857.825