Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1350 ATGCCCACCATTTCTATTTCTCTAATTTCCATCTTCCTTTTTCTCTATTTCTTTTCAGGTGTGAATTCAGCCACTTTCACAATCTTGAATCAATGTGATTACACAGTATGGCCTGGACTTTTATCCGGTGCCGGCACATCGGAGCTCTCGACTACCGGCTTCGCCCTCCAACCGAAAGAATCCACCTCCGTCGTTGTGCCACCTTCCTGGTCCGGCCGCATCTGGGGTCGCACCTATTGCTCCCAAGATGTCGCCGGGCGATTCTCCTGCACCACCGCCGACTGTGGCTCCGGCACCGTTGAATGCAACGGTGCCGGTGCAGCCCCACCGGCCACCCTAGCCGAATTCACCCTCAACGGTGCTAACGGGCTCGATTTTTACGACGTGAGCCTCGTCGACGGCTACAATGTAGCCATGTTGGTGACACCACAAGGAGGAACCGGAGGTAACTGTTCGGTAACCGGTTGTGTTGCTGATTTGAACAGTGACTGTCCGAGCGAGCTGAGGGTGGTGGTCGGAGGCGGAGATGGGCGGAATGTGGCGTGTAAGAGTGGTTGTGGGGCGTTTGAGAAGCCGGAATATTGTTGCAGCGGTGAGTACGGGAATCCGAATAGTTGCCGGCCGACGACATATTCGGAATTCTTTAAGAAGGCATGTCCGACCGCTTATAGCTATGCTTTTGATGATCAAACAAGCACCTTCACTTGTTCTTCATCTAATTATCTCATTTCCTTTTGTCCTTCCCCTTCAACCAGTTTGAAATCATCAAATGGACAATACCGGTGGGCCGTCGACGTCTCAAGCGCCGACCACCGCACGCCGTCAACATCGGTGGCCGTCGTCTCCACAATTACGGCAGCTCTTTTAACCTTGATCCACCGGCCACCGGCCACCACCCTTGGACCCATCTTATAA 915 53.33 MPTISISLISIFLFLYFFSGVNSATFTILNQCDYTVWPGLLSGAGTSELSTTGFALQPKESTSVVVPPSWSGRIWGRTYCSQDVAGRFSCTTADCGSGTVECNGAGAAPPATLAEFTLNGANGLDFYDVSLVDGYNVAMLVTPQGGTGGNCSVTGCVADLNSDCPSELRVVVGGGDGRNVACKSGCGAFEKPEYCCSGEYGNPNSCRPTTYSEFFKKACPTAYSYAFDDQTSTFTCSSSNYLISFCPSPSTSLKSSNGQYRWAVDVSSADHRTPSTSVAVVSTITAALLTLIHRPPATTLGPIL 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41446347 41450109 - evm.model.ptg000021l.1350 HCH13g1350 557855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1350 304 Pfam Thaumatin family 30 247 IPR001938 -
HCH13g1350 304 PANTHER OS03G0233200 PROTEIN 11 247 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
HCH13g1350 304 ProSitePatterns Thaumatin family signature. 86 102 IPR017949 -
HCH13g1350 304 Gene3D Thaumatin 24 247 IPR037176 -
HCH13g1350 304 ProSiteProfiles Thaumatin family profile. 23 247 IPR001938 -
HCH13g1350 304 FunFam THAUMATIN-LIKE PROTEIN 1 24 247 - -
HCH13g1350 304 SUPERFAMILY Osmotin, thaumatin-like protein 24 248 IPR037176 -
HCH13g1350 304 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
HCH13g1350 304 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
HCH13g1350 304 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
HCH13g1350 304 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
HCH13g1350 304 PIRSF PR5 1 292 IPR001938 -
HCH13g1350 304 SMART tha2 26 247 IPR001938 -
HCH13g1350 304 CDD TLP-PA 25 246 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0114 HCH-Chr12:608954 HCH13g1350 HCH-Chr13:41446347 5.90E-95 dispersed
HCH13g1350 HCH-Chr13:41446347 HCH14g0652 HCH-Chr14:35186654 9.40E-109 dispersed
HCH13g1349 HCH-Chr13:41428794 HCH13g1350 HCH-Chr13:41446347 1.50E-67 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1350 - - - 0.0