Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1365 ATGAGAACACTTTGTGACGCTTGTGAAAGCGCTGCTGCTATCGTTTTTTGTGCTGCTGACGAAGCTGCTCTTTGCCGTTCTTGTGACGAGAAGGTCCATATGTGCAATAAACTTGCGAGTCGACATGTACGAGTTGGCCTTGCAAATCCCAGTGATGTTCCCCGTTGTGATATATGTGAGAATGCACCTGCTTTCTTTTACTGTGAGATAGATGGCAGTTCCCTTTGTTTGCAATGTGATATGATCGTTCATGTTGGAGGGAAAAGAACACATAAAAGATACCTTCTACTGAGACAGAGGGTCGAGTTCCCAGGGGATAAACCTAGTAATCTTGAGGATCCGTCTCCACAAACCAAGGTTCCCACCGATATAGGGAAGGGACATAATCAGCTTCATAAAGTGATAGTGGAAGAGAACCAGCAAAATCATCACAGACTATCGCCTGTTCGAGAGGCGAACGATGATGGGCATTCCGAGACAGATACAAAAATGATTGATCTGAATATGAAGCCTCAAAGGTTCCGTGGGCAGGCTGCTAATAATCAGGATTTATGA 555 44.68 MRTLCDACESAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPSNLEDPSPQTKVPTDIGKGHNQLHKVIVEENQQNHHRLSPVREANDDGHSETDTKMIDLNMKPQRFRGQAANNQDL 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41558799 41561276 + evm.model.ptg000021l.1365 HCH13g1365 557870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1365 184 CDD Bbox1_BBX-like 56 96 IPR049808 -
HCH13g1365 184 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270(InterPro)
HCH13g1365 184 Pfam B-box zinc finger 3 41 IPR000315 GO:0008270(InterPro)
HCH13g1365 184 FunFam B-box zinc finger protein 19 2 92 - -
HCH13g1365 184 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
HCH13g1365 184 SMART bboxneu5 51 96 IPR000315 GO:0008270(InterPro)
HCH13g1365 184 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
HCH13g1365 184 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 169 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
HCH13g1365 184 Gene3D Classic Zinc Finger 2 96 - -
HCH13g1365 184 CDD Bbox1_BBX-like 4 47 IPR049808 -
HCH13g1365 184 MobiDBLite consensus disorder prediction 138 162 - -
HCH13g1365 184 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0156 HCH-Chr12:825143 HCH13g1365 HCH-Chr13:41558799 3.90E-21 wgd
HCH13g1365 HCH-Chr13:41558799 HCH14g0629 HCH-Chr14:34995784 1.90E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32881 PF00643 zf-B_box 2.30E-06 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1365 - - - 0.0