Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1365 ATGAGAACACTTTGTGACGCTTGTGAAAGCGCTGCTGCTATCGTTTTTTGTGCTGCTGACGAAGCTGCTCTTTGCCGTTCTTGTGACGAGAAGGTCCATATGTGCAATAAACTTGCGAGTCGACATGTACGAGTTGGCCTTGCAAATCCCAGTGATGTTCCCCGTTGTGATATATGTGAGAATGCACCTGCTTTCTTTTACTGTGAGATAGATGGCAGTTCCCTTTGTTTGCAATGTGATATGATCGTTCATGTTGGAGGGAAAAGAACACATAAAAGATACCTTCTACTGAGACAGAGGGTCGAGTTCCCAGGGGATAAACCTAGTAATCTTGAGGATCCGTCTCCACAAACCAAGGTTCCCACCGATATAGGGAAGGGACATAATCAGCTTCATAAAGTGATAGTGGAAGAGAACCAGCAAAATCATCACAGACTATCGCCTGTTCGAGAGGCGAACGATGATGGGCATTCCGAGACAGATACAAAAATGATTGATCTGAATATGAAGCCTCAAAGGTTCCGTGGGCAGGCTGCTAATAATCAGGATTTATGA 555 44.68 MRTLCDACESAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPSNLEDPSPQTKVPTDIGKGHNQLHKVIVEENQQNHHRLSPVREANDDGHSETDTKMIDLNMKPQRFRGQAANNQDL 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41558799 41561276 + evm.model.ptg000021l.1365 HCH13g1365 557870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1365 184 CDD Bbox1_BBX-like 56 96 IPR049808 -
HCH13g1365 184 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270(InterPro)
HCH13g1365 184 Pfam B-box zinc finger 3 41 IPR000315 GO:0008270(InterPro)
HCH13g1365 184 FunFam B-box zinc finger protein 19 2 92 - -
HCH13g1365 184 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
HCH13g1365 184 SMART bboxneu5 51 96 IPR000315 GO:0008270(InterPro)
HCH13g1365 184 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
HCH13g1365 184 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 169 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
HCH13g1365 184 Gene3D Classic Zinc Finger 2 96 - -
HCH13g1365 184 CDD Bbox1_BBX-like 4 47 IPR049808 -
HCH13g1365 184 MobiDBLite consensus disorder prediction 138 162 - -
HCH13g1365 184 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1365 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0156 HCH-Chr12:825143 HCH13g1365 HCH-Chr13:41558799 3.90E-21 wgd
HCH13g1365 HCH-Chr13:41558799 HCH14g0629 HCH-Chr14:34995784 1.90E-64 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH9g0345 . 19 366 C2C2-CO-like Transcription Factor Family AT5G15850 50.3 1.2e-57 220.7
HCH4g0488 . 1 346 C2C2-CO-like Transcription Factor Family AT5G24930 60.5 3.1e-82 302.4
HCH8g1002 . 20 370 C2C2-CO-like Transcription Factor Family AT5G24930 51.2 6.4e-56 214.9
HCH8g1002 . 1 370 C2C2-CO-like Transcription Factor Family AT5G57660 51.6 2.1e-67 253.1
HCH2g0643 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 55.4 8.6e-88 320.9
HCH7g0361 . 1 415 C2C2-CO-like Transcription Factor Family AT3G07650 52.8 1.8e-82 303.1
HCH2g0643 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 6.2e-86 314.7
HCH7g0361 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 52.8 2.9e-83 305.8
HCH2g0643 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 6.2e-86 314.7
HCH7g0361 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 52.8 2.9e-83 305.8
HCH7g0529 . 1 204 C2C2-CO-like Transcription Factor Family AT1G75540 54.6 5.2e-52 201.8
HCH12g0156 . 1 214 C2C2-CO-like Transcription Factor Family AT1G75540 50.9 2.6e-51 199.5
HCH13g1365 . 1 183 C2C2-CO-like Transcription Factor Family AT2G21320 60.1 3.4e-55 211.5
HCH14g0629 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 54.3 6.9e-48 187.2
HCH13g1365 . 1 184 C2C2-CO-like Transcription Factor Family AT4G38960 62.5 3.3e-56 214.9
HCH14g0629 . 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 56.8 2.4e-51 198.7
HCH7g0529 . 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 58.1 2.1e-55 212.6
HCH4g0768 . 1 210 C2C2-CO-like Transcription Factor Family AT4G39070 51.9 1.8e-46 183.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004570 3 1 3 2 1 1 2 1 1 0 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 0 1 2 2 2 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32881 PF00643 zf-B_box 2.30E-06 No_clan HCH TF