Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH13g1374 | ATGGAAGCCTTTTCCATTTCACCGTTTTTACTCTCCATCATCCTTGTAATAGTAGTTTTACTACTCTTCGGTTCGGTTTTTCGATTTCGACGACGACGACTTCCACTTCCACCAGGGCCTAAAGGACTACCCCTCATCGGAAATATGATGATGATGGACCAACTGAGCCACCGTGGACTCGCCGTCCTCGCCAAACGTTACGGCGGAATCTTCCATCTTCGCATGGGCTTCCTCCATATGGTGGCTATTTCCAGCCCCGAAGTAGCAAGAAACATCCTTCAGGTTCAAGACAGCATCTTCTCAAACCGCCCCGCCACCGTCGCCATCCGCTACCTAACTTACGACCGATCAGATATGGCCTTCGCTCATTACGGGCCTTTCTGGCGTCAAATCCGTAAGCTCTGCGTTATCAAACTCTTCAGCCGTAAACGTGCCGAGTCTTGGGCTTCTGTCCGAGATGAAGTCGATAATCTTCTCCAAAAACTCGCCGGAAAAATTGGAACTCCGGTGAACGTCGGCGAGCTGGTATTTGAAATGACAATGGATATTATTTACAGGGCAGCTTTTGGGACGAGTGAAAGAGAAGGGCAAGCTGAGTTCATAGGAATATTGCAAGAATTCTCAAAGCTTTTTGGTGCTTTTAATATTGCTGATTTTGTTCCTTGTCGTGGTTGGATTGATCCTCAAGGTCTTAATGGAAGACTCGTTGTAGCTCGGCGGTCGCTTGATCGGTTTATCGATCGAATTATCGACGAACATTTGCAGAAAAGAAAGGAGAAGGAAGAAGAGGATGATGGTGATGGAGACATGGTTGATGAATTATTAGGTTTCTATAGTGAAGAACAAATGAAAGAAAGGGATTTGGAGGATTCACATTCTTCCATCAAACTTACTAGAGACAATATCAAAGCCATCATCATGGACGTGATGTTTGGCGGCACAGAAACGGTAGCATCAGCCATTGAATGGGCGATCTCGGAGCTCATGAAGAATCCTCAAGAGCTAAAGAAAGTCCAACAAGAACTCGCCGACGTCGTTGGTCTTCACCGGCGAGTCGAAGAATCCGATTATGATAACCTTATTTACCTCAAATGTGCTCTCAAAGAAACTCTCAGACTTCATCCTCCAATCCCTCTTCTCCTCCACGAGACCGCCGAGGATTCTGAAGTCTCCGGCTACTACATCCCGGCCAAGACACGTGTCATGATCAATGCATGGGCCATCGGAAGAGACGAGAACTCATGGGAGGAGCCGGAGAGTTTTAGGCCGTCGAGGTTTCTGAAAGAAGGCGTCCCCGACTTTAAGGGAAGTAATTTTGAGTTCATACCGTTCGGTTCTGGTCGGAGGTCGTGTCCGGGGATGCAATTGGGATTGTATGCGGCGGAGATGGCGGTGGCGCAGTTGCTTCACTGTTTTCGATGGGAGTTGCCTGACGGGATGAAACCGAGCGAGTTGGATATGAATGACATGTTTGGACTCACGGCGCCGAGGGCGACTCGACTCGTCGCCGTGCCCTCGAAGAGAATTGTTTGCCCTTTTGTTTGA | 1545 | 48.28 | MEAFSISPFLLSIILVIVVLLLFGSVFRFRRRRLPLPPGPKGLPLIGNMMMMDQLSHRGLAVLAKRYGGIFHLRMGFLHMVAISSPEVARNILQVQDSIFSNRPATVAIRYLTYDRSDMAFAHYGPFWRQIRKLCVIKLFSRKRAESWASVRDEVDNLLQKLAGKIGTPVNVGELVFEMTMDIIYRAAFGTSEREGQAEFIGILQEFSKLFGAFNIADFVPCRGWIDPQGLNGRLVVARRSLDRFIDRIIDEHLQKRKEKEEEDDGDGDMVDELLGFYSEEQMKERDLEDSHSSIKLTRDNIKAIIMDVMFGGTETVASAIEWAISELMKNPQELKKVQQELADVVGLHRRVEESDYDNLIYLKCALKETLRLHPPIPLLLHETAEDSEVSGYYIPAKTRVMINAWAIGRDENSWEEPESFRPSRFLKEGVPDFKGSNFEFIPFGSGRRSCPGMQLGLYAAEMAVAQLLHCFRWELPDGMKPSELDMNDMFGLTAPRATRLVAVPSKRIVCPFV | 514 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 41635663 | 41638598 | - | evm.model.ptg000021l.1374 | HCH13g1374 | 557879 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH13g1374 | 514 | PRINTS | E-class P450 group I signature | 404 | 428 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1374 | 514 | PRINTS | E-class P450 group I signature | 451 | 474 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1374 | 514 | PRINTS | E-class P450 group I signature | 441 | 451 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1374 | 514 | PRINTS | E-class P450 group I signature | 321 | 347 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1374 | 514 | PRINTS | E-class P450 group I signature | 301 | 318 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1374 | 514 | PRINTS | E-class P450 group I signature | 364 | 382 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1374 | 514 | PRINTS | E-class P450 group I signature | 88 | 109 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1374 | 514 | PRINTS | E-class P450 group I signature | 64 | 83 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1374 | 514 | Gene3D | Cytochrome P450 | 26 | 508 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1374 | 514 | PANTHER | CYTOCHROME P450 84A1-RELATED | 13 | 513 | IPR053062 | GO:0004497(PANTHER) | |
| HCH13g1374 | 514 | FunFam | Cytochrome P450 84A1 | 29 | 507 | - | - | |
| HCH13g1374 | 514 | PRINTS | P450 superfamily signature | 312 | 329 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1374 | 514 | PRINTS | P450 superfamily signature | 442 | 451 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1374 | 514 | PRINTS | P450 superfamily signature | 365 | 376 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1374 | 514 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 444 | 453 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| HCH13g1374 | 514 | Pfam | Cytochrome P450 | 37 | 497 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH13g1374 | 514 | CDD | CYP71-like | 66 | 501 | - | - | |
| HCH13g1374 | 514 | SUPERFAMILY | Cytochrome P450 | 27 | 508 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH13g1374 | HCH-Chr13:41635663 | HCH5g1077 | HCH-Chr5:16757357 | 1.10E-218 | dispersed | |
| HCH13g1374 | HCH-Chr13:41635663 | HCH14g0627 | HCH-Chr14:34986218 | 9.00E-221 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH13g1374 | K09755 | - | mdm:103436113 | 767.689 |