Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1375 ATGGAATGTGTAGAAATGGGTGTGAAAATGAGCCCACAAATTTATTTTGATGAAAATGTTGTGTCTTGTGATGATTTTTTTGTGGACCAACTCCTTGATTTATCTAATGAAGAAGAATTTATGGAACAAGAAGATGAAGAAGAAGAAGAAAATGAAAAAGGGTGTTCTTTACTTTCTTCTCAAAATGTTTCCGTCTCTCCAAAAGACGACTTCTCTTCTCTCCCGACAAGCGAACTTAGCGTTCCGGCAGATGATTTAGAAGACTTGGAATGGCTTTCCCATTTCGTTGAAGATTCTTTCTCTGAATTTTCCACTCCTTTCCCCGCCGGAATTTCTCCACCGGAGCCGAAAGAGGAGACATTAACGGCGCCGAACACGCCCGGTTCTTGTTTCAATTCTCCGGTTCCGGTCAAGGCTAGAAGCAAGCGTACGAGAACCGGTGGTCGGGTTTGGTGTCTCCGGTCACCGCCGTTGACAGAGTCGTCTTCCGGTTCGACGACGTCGTCTTCCTCATCGTCGCCGCCGAGTCATTGGCTAATTTATAATTCTGAACAACTTTTCTCGCCGGGAATTAAGCCGGCGAAGAAACCGAGGAAAAGGTTGATGACGGAAAAAGCCAGAATTTGTGGGGTCCAGCAGCCTCGGCGGTGCAGCCATTGTGGCGTTCAGAAAACCCCTCAATGGCGAACCGGTCCACTCGGGGCCAAAACTCTTTGTAATGCTTGTGGTGTTCGGTTTAAATCGGGTCGCCTTTTACCCGAATATCGACCCGCATGTAGCCCGACTTTCTCCAGTGAATTGCACTCGAACCACCACCGGAAGGTTTTGGAGATGCGGCGGAAAAGAGAACCGGTGGCCGGTGGTCTGGATTCCCCGGCCGTGCCGAGTTTCTAA 894 48.66 MECVEMGVKMSPQIYFDENVVSCDDFFVDQLLDLSNEEEFMEQEDEEEEENEKGCSLLSSQNVSVSPKDDFSSLPTSELSVPADDLEDLEWLSHFVEDSFSEFSTPFPAGISPPEPKEETLTAPNTPGSCFNSPVPVKARSKRTRTGGRVWCLRSPPLTESSSGSTTSSSSSSPPSHWLIYNSEQLFSPGIKPAKKPRKRLMTEKARICGVQQPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKREPVAGGLDSPAVPSF 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41652576 41653566 - evm.model.ptg000021l.1375 HCH13g1375 557880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1375 297 SMART GATA_3 211 265 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH13g1375 297 Coils Coil 31 51 - -
HCH13g1375 297 MobiDBLite consensus disorder prediction 37 52 - -
HCH13g1375 297 MobiDBLite consensus disorder prediction 37 79 - -
HCH13g1375 297 MobiDBLite consensus disorder prediction 106 139 - -
HCH13g1375 297 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 213 274 - -
HCH13g1375 297 ProSitePatterns GATA-type zinc finger domain. 217 242 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH13g1375 297 Pfam GATA zinc finger 217 251 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH13g1375 297 CDD ZnF_GATA 216 264 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH13g1375 297 MobiDBLite consensus disorder prediction 156 175 - -
HCH13g1375 297 ProSiteProfiles GATA-type zinc finger domain profile. 211 247 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH13g1375 297 PIRSF Txn_fac_GATA_plant 1 291 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
HCH13g1375 297 PANTHER GATA TRANSCRIPTION FACTOR 25 284 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
HCH13g1375 297 MobiDBLite consensus disorder prediction 55 79 - -
HCH13g1375 297 Gene3D - 210 284 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
HCH13g1375 297 MobiDBLite consensus disorder prediction 152 175 - -
HCH13g1375 297 FunFam GATA transcription factor 208 290 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1375 HCH-Chr13:41652576 HCH2g0495 HCH-Chr2:48563247 1.60E-49 dispersed
HCH13g1375 HCH-Chr13:41652576 HCH14g0625 HCH-Chr14:34968009 9.90E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32883 PF00320 GATA 3.60E-16 CL0167 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1375 - - - 0.0