Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1375 ATGGAATGTGTAGAAATGGGTGTGAAAATGAGCCCACAAATTTATTTTGATGAAAATGTTGTGTCTTGTGATGATTTTTTTGTGGACCAACTCCTTGATTTATCTAATGAAGAAGAATTTATGGAACAAGAAGATGAAGAAGAAGAAGAAAATGAAAAAGGGTGTTCTTTACTTTCTTCTCAAAATGTTTCCGTCTCTCCAAAAGACGACTTCTCTTCTCTCCCGACAAGCGAACTTAGCGTTCCGGCAGATGATTTAGAAGACTTGGAATGGCTTTCCCATTTCGTTGAAGATTCTTTCTCTGAATTTTCCACTCCTTTCCCCGCCGGAATTTCTCCACCGGAGCCGAAAGAGGAGACATTAACGGCGCCGAACACGCCCGGTTCTTGTTTCAATTCTCCGGTTCCGGTCAAGGCTAGAAGCAAGCGTACGAGAACCGGTGGTCGGGTTTGGTGTCTCCGGTCACCGCCGTTGACAGAGTCGTCTTCCGGTTCGACGACGTCGTCTTCCTCATCGTCGCCGCCGAGTCATTGGCTAATTTATAATTCTGAACAACTTTTCTCGCCGGGAATTAAGCCGGCGAAGAAACCGAGGAAAAGGTTGATGACGGAAAAAGCCAGAATTTGTGGGGTCCAGCAGCCTCGGCGGTGCAGCCATTGTGGCGTTCAGAAAACCCCTCAATGGCGAACCGGTCCACTCGGGGCCAAAACTCTTTGTAATGCTTGTGGTGTTCGGTTTAAATCGGGTCGCCTTTTACCCGAATATCGACCCGCATGTAGCCCGACTTTCTCCAGTGAATTGCACTCGAACCACCACCGGAAGGTTTTGGAGATGCGGCGGAAAAGAGAACCGGTGGCCGGTGGTCTGGATTCCCCGGCCGTGCCGAGTTTCTAA 894 48.66 MECVEMGVKMSPQIYFDENVVSCDDFFVDQLLDLSNEEEFMEQEDEEEEENEKGCSLLSSQNVSVSPKDDFSSLPTSELSVPADDLEDLEWLSHFVEDSFSEFSTPFPAGISPPEPKEETLTAPNTPGSCFNSPVPVKARSKRTRTGGRVWCLRSPPLTESSSGSTTSSSSSSPPSHWLIYNSEQLFSPGIKPAKKPRKRLMTEKARICGVQQPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKREPVAGGLDSPAVPSF 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41652576 41653566 - evm.model.ptg000021l.1375 HCH13g1375 557880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1375 297 SMART GATA_3 211 265 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH13g1375 297 Coils Coil 31 51 - -
HCH13g1375 297 MobiDBLite consensus disorder prediction 37 52 - -
HCH13g1375 297 MobiDBLite consensus disorder prediction 37 79 - -
HCH13g1375 297 MobiDBLite consensus disorder prediction 106 139 - -
HCH13g1375 297 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 213 274 - -
HCH13g1375 297 ProSitePatterns GATA-type zinc finger domain. 217 242 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH13g1375 297 Pfam GATA zinc finger 217 251 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH13g1375 297 CDD ZnF_GATA 216 264 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH13g1375 297 MobiDBLite consensus disorder prediction 156 175 - -
HCH13g1375 297 ProSiteProfiles GATA-type zinc finger domain profile. 211 247 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH13g1375 297 PIRSF Txn_fac_GATA_plant 1 291 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
HCH13g1375 297 PANTHER GATA TRANSCRIPTION FACTOR 25 284 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
HCH13g1375 297 MobiDBLite consensus disorder prediction 55 79 - -
HCH13g1375 297 Gene3D - 210 284 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
HCH13g1375 297 MobiDBLite consensus disorder prediction 152 175 - -
HCH13g1375 297 FunFam GATA transcription factor 208 290 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1375 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1375 HCH-Chr13:41652576 HCH2g0495 HCH-Chr2:48563247 1.60E-49 dispersed
HCH13g1375 HCH-Chr13:41652576 HCH14g0625 HCH-Chr14:34968009 9.90E-55 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH12g0746 . 33 334 C2C2-Gata Transcription Factor Family AT5G25830 51.4 2.4e-73 272.7
HCH4g0320 . 69 357 C2C2-Gata Transcription Factor Family AT5G25830 51.7 1.4e-65 246.9
HCH13g1375 . 24 292 C2C2-Gata Transcription Factor Family AT3G51080 50.9 6.8e-54 208.0
HCH14g0625 . 92 269 C2C2-Gata Transcription Factor Family AT4G36240 51.9 8.6e-41 164.1
HCH5g0328 . 1 516 C2C2-Gata Transcription Factor Family AT4G17570 52.7 2.0e-135 479.6
HCH6g1060 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 50.8 9.9e-127 450.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008902 3 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32883 PF00320 GATA 3.60E-16 CL0167 HCH TF