Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH13g1378 ATGGGAATTGAAGTCTGTTTGGAGGAGCTTAAGCAAAGCTTCAGAAATGGAAGAACAAGGAGTTCTGAATGGAGGAAAAAGCAGCTGACTTCTCTCATTCAATTCATCCATGAAAAAGAAGACACCATTTTTGAAGTTATCAAACAAGATCTTGGAAAGCATCCAGTGGAAACTTATAGGGATGAGATTGGGGTAGTTTTGAAATCTGCTAAAAATGCTTTGTGCTGTTTAGAGAAATGGATGGCTCCCAAAAAGAGTTGTCTACCATTACTTTTCTTTCCAGCAAAAGGAGAAGTGCTGCCTGAGCCTTTTGGTTTGGTTCTCATAATTTCATCTTGGAACTTTCCACTCTCCCTGTCGTTGGATCCGTTAATTGGAGCGATATCGGCAGGCAATGCCGTGGTCCTAAAACCATCAGAACATGCTCCAGCTTGCTCTACTTTTCTCGCTGAAACTCTTCCTCTTTACTTGGATAGCCAAGCCATCAGGGTTATTAATGGTGGAGCAGATGTTAGTGAAGAACTTTTGCAGCAAAAATGGGACAAGATTTTCTTCACTGGGAGTCAGAGGATAGGGAAGATAGTGATGTCTGCTGCTGCAAAGCATTTAACACCTGTTGCTTTAGAACTAGGGGGGAAATGCCCCACAATCGTCGATTCCTCCTCCATCCATTCAGATATGAAGGTAGCAGTCAAAAGAATTGTGGGAGCCAAGTGGGGGCCTTGCTGTGGGCAGGCGTGCATAGGGATAGACTATGTACTTGTGGAGGACAAGTTTGCTTCAGAATTGATCGAGTCATTAAAGCAGATAATCAAGAAATTTTACAGTGAAGACCCGAAAAACTCGAACAGCATAGCCCGGATTGTTAATGAGAGTCAATTTGATAGAATCAGCAATCTTCTAAATGACCCCAAGGTCGCTGCTTCCATTGTTCATGGAGGTTCTTTAGATAAACATAAACTATTCATTGAGCCAACAATATTGTTAAATCCTCCACTCGATGCCGATGTCATGACCGAAGAGATATTCGGTCCAGTGTTGCCAATAGTCACATTGAACAAAATTGAAGAGAGCATCGAGTTCATCAATTCAAGACCAAAACCTCTGGCCCTCTACGCCTTCACCAAAGATGAAACTCTCAAGAAACGGATTTTATCCGAAACGTCGTCTGGAAGTGTGACATTCAATGATGCACTAATTCAGTTTGTGTGCGATTCACTACCATTTGGCGGTGTCGGTCAGAGTGGTTTCGGGAGGTACCATGGCAAGTATTCTTTCGATACATTCAGCCATGAAAAAGCAGTTCTGCAGAGAAGCTTCATGTTCGAACTCGAGCCACGATATCCACCATGGAACGATTTCAAGCTTACATTCATTAGATTGGCATATAGATTCGACTACTTTGGAATATTGCTGCTCCTTCTGGGGTTGAAAAAGTAG 1440 42.57 MGIEVCLEELKQSFRNGRTRSSEWRKKQLTSLIQFIHEKEDTIFEVIKQDLGKHPVETYRDEIGVVLKSAKNALCCLEKWMAPKKSCLPLLFFPAKGEVLPEPFGLVLIISSWNFPLSLSLDPLIGAISAGNAVVLKPSEHAPACSTFLAETLPLYLDSQAIRVINGGADVSEELLQQKWDKIFFTGSQRIGKIVMSAAAKHLTPVALELGGKCPTIVDSSSIHSDMKVAVKRIVGAKWGPCCGQACIGIDYVLVEDKFASELIESLKQIIKKFYSEDPKNSNSIARIVNESQFDRISNLLNDPKVAASIVHGGSLDKHKLFIEPTILLNPPLDADVMTEEIFGPVLPIVTLNKIEESIEFINSRPKPLALYAFTKDETLKKRILSETSSGSVTFNDALIQFVCDSLPFGGVGQSGFGRYHGKYSFDTFSHEKAVLQRSFMFELEPRYPPWNDFKLTFIRLAYRFDYFGILLLLLGLKK 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41696090 41698626 + evm.model.ptg000021l.1378 HCH13g1378 557883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH13g1378 479 FunFam Aldehyde dehydrogenase 11 215 - -
HCH13g1378 479 FunFam Aldehyde dehydrogenase 212 415 - -
HCH13g1378 479 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 12 433 IPR016162 GO:0016491(InterPro)
HCH13g1378 479 Pfam Aldehyde dehydrogenase family 11 435 IPR015590 GO:0016491(InterPro)
HCH13g1378 479 PIRSF ALDH 2 472 IPR012394 GO:0006081(InterPro)
HCH13g1378 479 PANTHER ALDEHYDE DEHYDROGENASE 4 477 IPR012394 GO:0004029(PANTHER)|GO:0005737(PANTHER)|GO:0006081(InterPro)|GO:0006081(PANTHER)
HCH13g1378 479 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 212 415 IPR016163 GO:0016620(InterPro)
HCH13g1378 479 SUPERFAMILY ALDH-like 6 451 IPR016161 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0821 HCH-Chr12:5368270 HCH13g1378 HCH-Chr13:41696090 1.10E-06 dispersed
HCH12g0822 HCH-Chr12:5371085 HCH13g1378 HCH-Chr13:41696090 5.50E-127 dispersed
HCH13g1378 HCH-Chr13:41696090 HCH6g1747 HCH-Chr6:49978929 8.00E-46 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH13g1378 K00128 - csv:101221321 779.245